Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq756 345 4e-90 seq170 145 8e-30 >seq756 Length=9614 Score = 345 bits (382), Expect = 4e-90 Identities = 594/849 (70%), Gaps = 20/849 (2%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 |||||||| ||| |||||| | ||||| || || | || | |||| |||||| Sbjct 3017 GAGAACCCGAACCGTTTCGTGCTCTTCCCGATCCAGGAGAACGAGGTCTGGCAGATGTAC 2958 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT-GTCCAAGGACACGAG 116709 || ||||| |||||| |||||||| | || ||| | ||||| || || | | | || Sbjct 2957 AAGAAGGCTGAGGCGAGCTTCTGGACGGCTGAAGAGATCGACCTCGTGCACGACCTCAAG 2898 Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 |||||| | | | | |||||||||||| | || |||||||||||||| || || || Sbjct 2897 -GACTGGAACAACCTCACGGACAACGAGCGCTACTTTATCAAGCACGTGCTCGCGTTCTT 2839 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA-GCGTTTCGCTCAG-GAGGTG 116827 ||| ||||| || ||||||||||||||||| || | ||| | ||| ||| |||||| Sbjct 2838 CGCGGCCAGTGATGGCATCGTCAACGAGAACCTCG-CGATGAACTTCAG-CAGCGAGGTG 2781 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 ||||| | |||||||| |||||||||||||| ||||| || || |||||| | |||||| Sbjct 2780 CAGGTTCCTGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCGATTGAGAACATCCACTCG 2721 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGT 116944 || |||| ||| ||||||||||||||| | | | | ||| |||| | || Sbjct 2720 GAGGTGTACTCGCTGCTCATCGACACGTACATCAAGGACCAGACCGAGAAGAACCACC-- 2663 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 | | ||||||||||||||| || || || | |||||||| | |||||||| Sbjct 2662 -TTCTCCGCGCCATCGAGACGATCCCTTGTGTGCAGAAGAAGGCCCACTGGGCGCTCAAG 2604 Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 ||| || | | ||||| |||| |||||| | || || ||||| ||||||||| Sbjct 2603 TGGTGCGACTCGCGCCGCGCCGCGTTCGCCGAGCGTATCGTCGCGTTCGCTGCCGTCGAG 2544 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 ||| ||||||| |||||| ||| | | || || ||||||||||| |||||||| ||| Sbjct 2543 GGCATCTTCTTCTCGGGCTCGTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTTATG 2484 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTT 117184 || ||||| | ||| |||||||||||||| | ||||||||||| || |||||||| Sbjct 2483 CCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACGAGGGTCTCCACTGCGACTTC 2424 Query 117185 GCCTGTTTGCTG---TTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAG 117241 || || ||||| | ||||| ||| || || | | ||| || ||| Sbjct 2423 GCGTGCCTGCTGTACTCCAAGCTCGCCAACAAGCTCCC---CGAGTCTCGCATCCACGAG 2367 Query 117242 ATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGT 117301 ||| | ||| || ||||| |||||| || ||| || || |||| |||||| Sbjct 2366 ATCATTCGCGATGCTGTCGCGATCGAGAAGGAGTTCGTCCAGGACTCGCTCCCGGTGGAG 2307 Query 117302 CTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCT 117360 || | || | || | || | |||| || ||||| |||||| |||||| | || Sbjct 2306 CTCATCGGTATGAACT-CGTCTCTCATGTGCCAGTACATTGAGTTCTGCGCCGATCGCCT 2248 Query 117361 GCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAA 117420 || | || ||| | || |||||| |||||| | | |||||| | |||| ||| | Sbjct 2247 CCTCCACGCGCTTGGCGTTGCCAAGATCTACAAGGTGTCGAACCCGTTCGACTGGATGGA 2188 Query 117421 CCTCATCTC 117429 | | ||||| Sbjct 2187 CATGATCTC 2179 >seq170 Length=18893 Score = 145 bits (160), Expect = 8e-30 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || || || ||||| || ||||| |||||||||| | Sbjct 6454 AAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCC 6513 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | | ||||| | || || | ||||| ||||| ||||| |||| Sbjct 6514 TTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGA 6573 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||| Sbjct 6574 TCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTA 6633 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||||||| | ||||| || || ||| | ||| Sbjct 6634 CAACATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGC 6673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515125327061760