Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq422 241 3e-58 seq1328 127 4e-24 seq756 91.5 3e-13 >seq422 Length=12968 Score = 241 bits (266), Expect = 3e-58 Identities = 621/933 (67%), Gaps = 26/933 (3%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || |||||||| | ||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 1818 GACTTTGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCTCCTGCGCGTC 1759 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | ||||||| ||| || || ||||| ||| | |||| || |||||||| || ||| Sbjct 1758 GGTGGCAAGGTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCAC 1699 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 ||| ||||||| || || ||||||||||||| ||| || ||| | || Sbjct 1698 AAGCATGACATCGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACG 1639 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTT 249048 || || || |||||||| ||||||||||| || | |||||| |||||||| Sbjct 1638 CACGCGACGCCGACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTC 1579 Query 249049 CTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCG 249108 || || |||||| | || ||||| |||| ||||| ||||||||||| || ||| || Sbjct 1578 CTGCTCGCCATGAAGGATGACTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCC 1519 Query 249109 AAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGT 249168 || || || | || ||||| || ||| || ||| ||||||||| |||| Sbjct 1518 TGCATCTCCAAGTGGGCCGGCGGCATTGGTGTCAGCGTGCACAACATCCGCGCGACCAAC 1459 Query 249169 TCGTACATCAAAGGTACAAATGGGGTCAGTG-ATGGTATCGTACCCCTCCTTCGATGCTT 249227 ||||||||| || || || || || | | || |||| ||| | || || || Sbjct 1458 TCGTACATCCGTGGCACGAA-CGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTT 1400 Query 249228 TGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCAT 249284 | ||| || | | | | |||| || || || ||||| |||||||| || Sbjct 1399 CAACGACACGGCGCGTTATGTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGAT 1340 Query 249285 GTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGG 249344 |||| | || |||||||||||| || || |||||||| ||| | || |||||| |||| Sbjct 1339 GTATCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGG 1280 Query 249345 CAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCAT 249404 ||||||||| | || ||||| || ||||||| ||||| | |||| | ||||| Sbjct 1279 CAACGAGCTGCACCGCGCTCGTGATCTGTTCTACGCGATGTGGATTCCCGATCTCTTCAT 1220 Query 249405 GCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCT 249464 | ||||| ||||| ||||||| |||| || | | ||| ||| || |||| || Sbjct 1219 GAAGCGCGTTGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCACCGGGTCT 1160 Query 249465 C--ATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATA--AGAAATACGAATCCAAC 249519 | ||| | || | ||| |||| | || || || | | ||||| | | Sbjct 1159 CTACACGACGT--GGGGTGACGAGTTCG---AGGCGCTGTACCACCAGTACGAGCGCGAG 1105 Query 249520 GGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCC 249573 ||| || ||||||| ||| || | | || || |||| | | ||||| Sbjct 1104 GGCCGCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGA---TCCTCGAGTCG 1048 Query 249574 CAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAGTAAC 249633 ||||| ||||| || |||||| ||| ||| ||| |||| ||| |||| ||| Sbjct 1047 CAGATCGAGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGTAACCGCAAGTCGAAC 988 Query 249634 CAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCAATACTC 249692 || | | | || || || ||||||||| || ||||| ||| |||||| | | ||| | Sbjct 987 CAGCAGAACCTCGGCACGATCCGCTCGAGCAACCTCTGCTGC-GAGGTGCTCGAGTACAC 929 Query 249693 GTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 ||| || ||| | || || |||||||| || Sbjct 928 GTCGCCCGACGAGGTCGCGGTGTGCAACCTCGC 896 >seq1328 Length=6526 Score = 127 bits (140), Expect = 4e-24 Identities = 198/276 (72%), Gaps = 9/276 (3%) Strand=Plus/Minus Query 254106 CTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACT 254165 |||||||||||||| || ||||| ||||| | | ||||| ||||| || |||||| Sbjct 2686 CTCGAGCTGAACGCCTCGGACGATCGCGGCATCAAGGTCGTGCGCGAGAAAGTCAAGAGC 2627 Query 254166 TTCTC-CAAGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGAT 254224 ||| | || | || |||| | | || ||||| ||||| |||||| || | | Sbjct 2626 TTCGCGCAGGGTG-CGATCA-GCAGCTCGT--CCGGCATGCCGCCGTTCAAGATCATCGT 2571 Query 254225 CCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGA 254284 ||||||||||| ||| | ||||| | |||||||||||| || || || || | |||||| Sbjct 2570 GCTGGACGAGGCCGACTCGATGACCGGCGACGCGCAGTCGGCACTGCGTCGCATGATGGA 2511 Query 254285 GACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATC 254342 | ||||| || ||||| || ||||| | || |||||||| | || | ||||| Sbjct 2510 AAACTACTCCAAGGTCACGCGCTTCTGCCTCATCTGTAACTACGTCAGCCGCA--TCATC 2453 Query 254343 GCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTC 254378 | ||| | || || || || ||||||||||| ||| Sbjct 2452 GAGCCGATCGCGTCGCGTTGTGCCAAGTTTCGGTTC 2417 >seq756 Length=9614 Score = 91.5 bits (100), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 157243 AACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAG 157302 ||| |||| ||| ||||||| |||| | ||||| || ||||||||||| |||||||| Sbjct 2118 AACGCCGGCCTTCGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAG 2177 Query 157303 AGAAATCATGTCCATCCACTCGAATGGGTT 157332 || |||||||||||||| ||||| ||||| Sbjct 2178 CGAGATCATGTCCATCCAGTCGAACGGGTT 2207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073565868755968