Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq422 336 2e-87 seq756 230 2e-55 seq170 113 4e-20 >seq422 Length=12968 Score = 336 bits (372), Expect = 2e-87 Identities = 674/989 (68%), Gaps = 20/989 (2%) Strand=Plus/Plus Query 23006 ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTG 23065 ||||||||| | ||||| || || || ||||| || || |||||||| |||||| Sbjct 872 ACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACGTG 931 Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 ||||| | | ||| || || ||||| | |||||||| | || |||||| Sbjct 932 TACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTC 991 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185 || || || ||||| |||||||| ||||||||||||||||||||||||| ||||||| Sbjct 992 GACTTGCGGTTACACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGAC 1051 Query 23186 TCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTC 23244 |||| |||||| ||| | ||| ||| | | |||| || | | ||| || Sbjct 1052 TCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGAT-CGTCTTGCGCGCGCGGCCCTCGCG 1110 Query 23245 CTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG--CCGGGC 23302 |||||||| ||||||| ||| || || ||| |||| | |||| || || || Sbjct 1111 CTCGTACTGGTGGTACAGCGCCTCGAACTCGTCACCCCAC--GTCGTGTAGAGACCCGGT 1168 Query 23303 GATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGA 23362 | | |||| || | || |||||| || |||||||| |||| || ||| Sbjct 1169 GCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGA 1228 Query 23363 TCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTC 23422 || || ||||| | ||||||||||| || || ||||| | ||| |||||| |||| Sbjct 1229 TCGGGAATCCACATCGCGTAGAACAGATCACGAGCGCGGTGCAGCTCGTTGCCGTGGTTC 1288 Query 23423 TTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAAC 23482 || || | || | || || || | ||| || |||||||||||||| || | || ||| Sbjct 1289 TTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAAC 1348 Query 23483 GCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTT 23542 | |||| | ||| ||| |||||||| || ||||| ||||||| |||| |||| | Sbjct 1349 GAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGC 1408 Query 23543 AGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAAC--CTT--T 23598 ||||| |||||||| ||||| |||| |||| | || ||||| | || || | Sbjct 1409 AGCATGGGCACGAGGCCGTTCGACGAGCCG--TTCG--TGCCACGGATGTACGAGTTGGT 1464 Query 23599 TGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCA 23658 || || | |||||| ||| || ||| ||||| ||| || | || || || ||||| Sbjct 1465 CGCGCGGATGTTGTGCACGCTGACACCAATGCCGCCGGCCCACTTGGAGATGCAGGCGCA 1524 Query 23659 TTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACA 23718 || || || ||||| |||||||||||||| ||| || || | |||| || ||| || Sbjct 1525 CTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCATCCTTCATGGCGAGCAGGAAGCA 1584 Query 23719 CGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAA 23778 ||| |||| |||| ||||| |||| |||||| ||||| | |||||||| || Sbjct 1585 CGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAA 1644 Query 23779 GTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTAT 23838 | | | | |||||| | |||||| |||| ||||| || ||||| | ||| || Sbjct 1645 GAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGAT 1704 Query 23839 ACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAAT 23895 |||| |||||||||| ||||| | || || | || ||||| || | ||| | Sbjct 1705 GCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCGCTCAGCGACCTTGCCACCG---AC 1761 Query 23896 TTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACG 23955 | || || || | | ||| || || ||||| ||||| || | |||||| || Sbjct 1762 GCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCG 1821 Query 23956 ATCGTGCACTATGGCCGAATTCAAACGGT 23984 ||||| | || ||||| || | |||| Sbjct 1822 GTCGTGGATGATCGCCGAGTTGAGGCGGT 1850 Score = 163 bits (180), Expect = 3e-35 Identities = 390/577 (68%), Gaps = 16/577 (3%) Strand=Plus/Plus Query 22151 AGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAAT 22210 || || ||||| |||||||| |||||| ||||||||||||| || || || ||||||| Sbjct 1 AGGTAGTACATACCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAGC 60 Query 22211 TTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCT 22270 || | ||||| | |||| |||||||| |||||| ||||| ||| | || Sbjct 61 TTGCTGATCGTCGGCTCCGCGATGTGCACATTGAGCGACTGGCTCTGGCAGATGTAGGCG 120 Query 22271 CCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTAC 22330 || || ||||||||||| | | || | | | || ||||| || ||||||||| Sbjct 121 CCGCGGTCGGCGGCCATGTCGAGCACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTAC 180 Query 22331 AGTTGCCTGATCTCTAACGGTATCGATTCGATCCT-CTGGACGGACCCGTTATTGTGTAT 22389 | | | | | ||| ||| | || | | ||| || || |||| | ||| | Sbjct 181 TTCTCCTTCACGGCATCCGGGATC-ACACGCACGTTCTGCACTGAGCCGTGGTCGTGCAG 239 Query 22390 GATCAAATTTTTAA--TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGA 22447 |||| || | ||| ||| ||| | |||| || | | || || | ||| Sbjct 240 GATCTGGTTGCGCACCTCGGG-CGT-CCAGATGCCGAGCTCGATGAGCTCCTTCATCAGG 297 Query 22448 TGACGGTTCACCA-CTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATG 22505 | |||||| | | |||| |||||| | |||| |||||||| | ||| ||||||| | Sbjct 298 TACTTGTTCACGATCGTGAA-CTCGCCTG-CAAGCACGCGGCGGTTGTACATGTTGGTCG 355 Query 22506 TGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCG 22565 ||||||| |||| || || ||||| || || ||||| |||||||| || |||||||||| Sbjct 356 TGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCG 415 Query 22566 GCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACC 22625 |||| | ||| |||||||| | || ||||| || | | | ||||||| | || Sbjct 416 GCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCGGCCC 475 Query 22626 AGTCCCACAGATCGGA---CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGC 22682 ||||||| || |||| |||||| || | ||||||| ||||| || || | ||| Sbjct 476 AGTCCCAGAGGCCGGACGTCGGCGTGAC---GCCCCACATGTCGTACTGGAAGATGCCCT 532 Query 22683 GACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACC 22719 ||| | || ||| ||||| | ||||||| || Sbjct 533 TGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCC 569 >seq756 Length=9614 Score = 230 bits (254), Expect = 2e-55 Identities = 556/828 (67%), Gaps = 14/828 (2%) Strand=Plus/Minus Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632 ||| | |||||||| ||||| || || || ||||| | ||||| | ||||| Sbjct 2969 TGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGGACGGCTGAAGAGATCGACCTCGTG 2910 Query 57633 AAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTG 57692 | || || | || ||| | ||||| || ||| | | ||||| || |||||| Sbjct 2909 CACGACCTCAAGGACTGGAACAACCTCACGGACAACGAGCGCTACTTTATCAAGCACGTG 2850 Query 57693 TTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA 57752 | ||||| ||||| || ||||| || || |||||||| | | ||| || |||| Sbjct 2849 CTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCG-CGAT-GAACTTCA 2792 Query 57753 CAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAA 57810 || | ||||| || | |||||| | ||||| ||||| || || | || ||||| | Sbjct 2791 GCAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCGATTGAGA 2732 Query 57811 ACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGA 57870 || | || || || |||| ||||| |||||||| |||||| | |||||| | ||||| Sbjct 2731 ACATCCACTCGGAGGTGTACTCGCTGCTCATCGACACGTACATCAAGGACCAGACCGAGA 2672 Query 57871 AACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCC-AAGAAGGCAGAGTGG 57929 | || || ||| ||||| || || ||| | || |||||||| | ||| Sbjct 2671 AGAACCACCTTCTCCGCGCCATCGAGACGAT-CCCTTGTGTGCAGAAGAAGGCCCACTGG 2613 Query 57930 TCAATCAAATGGATAAAAA-GCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGC 57988 | |||| ||| | ||||| || || ||||||||||| | | |||||||||| Sbjct 2612 GCGCTCAAGTGGTGCGACTCGCGCCGCG-CCGCGTTCGCCGAGCGTATCGTCGCGTTCGC 2554 Query 57989 CGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAAC 58047 |||||||| || || ||||| |||||| || ||| | || || ||| | ||||| | Sbjct 2553 TGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGCT-CTATCTTCTGGCTCAAGAAGC 2495 Query 58048 GCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCC 58107 ||||||| ||||| ||||| | || |||||| | || ||||| ||||||||||||| Sbjct 2494 GCGGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACGAGGGTCTCC 2435 Query 58108 ATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCA 58167 | || || |||||||| ||||||| | | | ||| || | | | ||||| Sbjct 2434 ACTGCGACTTCGCGTGCCTGCTGTACTCCAAGCTCGCCAACAAGCTCCCCGAGTCTCGCA 2375 Query 58168 TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTAC 58227 || || || || ||| || ||||||||||| || ||||| ||| || | || | Sbjct 2374 TCCACGAGATCATTCGCGATGCTGTCGCGATCGAGAAGGAGTTCGTCCAGGACTCGCTCC 2315 Query 58228 CGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCG 58287 |||||| | ||||||||||| | | |||| ||||||||||||| |||| Sbjct 2314 CGGTGGAGCTCATCGGTATGAACTCGTCTCTCATGTGCCAGTACATTGAGTTCTGCGCCG 2255 Query 58288 ACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGA 58345 | | || | | || || | | | | || ||||| | || ||||| || Sbjct 2254 ATCGCCTCCTCCACGCGCTTGGCGTTGCCAAGATC--TACAAGGTGTCGAACCCGTTCGA 2197 Query 58346 TTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 | ||| | ||||||||||| |||||||||| ||||| ||||| || Sbjct 2196 CTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAA 2149 >seq170 Length=18893 Score = 113 bits (124), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| ||||||||||| ||||| |||||||| ||||||| || || Sbjct 6454 AAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCC 6513 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || ||||| | || | ||||| |||| || ||||||||| || | || || || Sbjct 6514 TTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGA 6573 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || || ||||| ||||| ||| | || ||| Sbjct 6574 TCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 6613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445685181361920