Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6448 187 4e-43 seq8895 174 2e-39 seq2928 132 8e-27 >seq6448 Length=1030 Score = 187 bits (206), Expect = 4e-43 Identities = 187/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| ||||||||||| || ||||||||||| || || Sbjct 602 CGCTAAGCGTCATCGCAAGGTTCTTCGCGATAACATCCAGGGCATCACCAAGCCTGCCAT 661 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| |||||||||||||| ||||||||| |||| || || |||| || |||| Sbjct 662 CCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCAGGCCTGATCTACGAGGAGAC 721 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| |||||||| ||| ||| |||| || | || || || || Sbjct 722 CCGTGGTGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGGGACTCGGTCACGTACACGGA 781 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || |||||||| || || ||||||| ||||||| || | || ||||| || Sbjct 782 GCATGCGCGCCGTAAGACCGTTACTGCCATGGACGTCGTCTACGCCCTCAAGCGTCAGGG 841 Query 16672 CCG 16674 ||| Sbjct 842 CCG 844 >seq8895 Length=616 Score = 174 bits (192), Expect = 2e-39 Identities = 203/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 378 CGCTAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 319 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||||||||| || ||||||||| |||| || || |||| || |||| Sbjct 318 CCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 259 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| || | | ||| || || Sbjct 258 GCGCGGTGTGCTCAAGGTCTTCCTTGAGAACGTCATCCGCGACTCGGTGACCTACACGGA 199 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| |||| || || | || ||||| || Sbjct 198 GCACGCGCGCCGCAAGACCGTCACGGCCATGGACGTCGTGTACGCGCTCAAGCGTCAGGG 139 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | | || ||||| || ||||| | ||| Sbjct 138 CCGCACGCTCTACGGTTTCGGTGGTTAAGCGTCT 105 >seq2928 Length=3244 Score = 132 bits (146), Expect = 8e-27 Identities = 190/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| ||||| || |||||||| || ||||| ||||| || || Sbjct 2697 CGCCAAGCGCCATCGCAAGGTGCTTCGTGACAACATCCAGGGCATCACGAAGCCGGCGAT 2756 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| || ||||| |||||||| || || | |||| || |||| Sbjct 2757 CCGCCGTCTCGCTCGCCGAGGTGGTGTCAAGCGCATCAGCGGTCTCATCTACGAGGAGAC 2816 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| || | || || || || Sbjct 2817 GCGCGGTGTGCTCAAGGTGTTCCTCGAGAACGTGATCCGCGACTCGGTCACGTACACGGA 2876 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||||||||| | |||||| ||||||| || | || || || || Sbjct 2877 GCACGCGCGCCGCAAGACTGTCACGGCGATGGATGTCGTCTACGCGCTCAAGCGACAGGG 2936 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || || |||||| | ||| Sbjct 2937 ACGCACGCTCTACGGCTTTGGAGGCTAA 2964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79061873061168