Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq422 360 5e-94 seq875 140 8e-28 >seq422 Length=12968 Score = 360 bits (398), Expect = 5e-94 Identities = 726/1064 (68%), Gaps = 21/1064 (2%) Strand=Plus/Minus Query 363379 GAGTATGA-TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGG 363437 ||||| || || ||| || | |||||| | ||||| || ||||| || || ||| Sbjct 1812 GAGTACGACTACTTT-GGCTTCAAGACGCTCGAGAAGTCGTACCTCCTGCGCGTCGGTGG 1754 Query 363438 TGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCC 363497 | | | ||| ||||||||||| ||| | |||| || ||| | || ||||| | Sbjct 1753 CAAGGTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCACAAGCA 1694 Query 363498 GGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCTC-GTGTATTCACGCAC 363555 || | || |||||| | || || || || | | || || | | ||||||||| Sbjct 1693 TGACATCGACGCCGCGCTCGAGACGTACGAG--TACATGTCGCAAAGCTTCTTCACGCAC 1636 Query 363556 GCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTT 363615 || ||||| || ||| ||| || || || | || ||| |||| || ||||| || Sbjct 1635 GCGACGCCGACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCCTG 1576 Query 363616 CTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTT 363675 || |||||||| || || |||||||| |||| |||||| || ||| | || || Sbjct 1575 CTCGCCATGAAGGATGACTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCCTGC 1516 Query 363676 ATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACAGAACAG 363734 || |||||| || ||||| |||||||| | || | ||||| | || || ||| Sbjct 1515 ATCTCCAAGTGGGCCGGCGGCATTGGTGTCAGCG-TGCACAACATCCGCGCGACCAACTC 1457 Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 ||||| || ||||| || | ||||| || || || |||||||| || ||||| | Sbjct 1456 GTACATCCGTGGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCAA 1397 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 | | || ||| | || || || |||||||| || |||||||| || |||| || ||||| Sbjct 1396 CGACACGGCGCGTTATGTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTA 1337 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAA 363914 ||||||||| || ||||| || || ||||| || || ||| ||| ||| || || Sbjct 1336 TCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCAA 1277 Query 363915 AGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAA 363974 ||| || || |||||||||||||| || | ||| || | || | || ||||| Sbjct 1276 CGAGCTGCACCGCGCTCGTGATCTGTTCTACGCGATGTGGATTCCCGATCTCTTCATGAA 1217 Query 363975 GCGCGTGGAGGCA---GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCT 364031 |||||| ||||| || || ||| || || ||||| |||| || ||||| Sbjct 1216 GCGCGTTGAGGCCAACGGCGAG---TGGAGCCTGTTCTGCCCGAACGAGGCACCGGGTCT 1160 Query 364032 TTCC--GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGA 364089 | | || || |||||||||| | | || || ||| | |||| || ||||| Sbjct 1159 CTACACGACGT--GGGGTGACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCGAGGGC 1102 Query 364090 AAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATT 364149 || || ||||| || | ||| ||| |||| ||||| || ||| | || |||||||| Sbjct 1101 CGCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATC 1042 Query 364150 GAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAG 364209 ||||| || || || || ||| ||||||| || ||||| ||||||||||| ||||||||| Sbjct 1041 GAGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGTAACCGCAAGTCGAACCAGCAG 982 Query 364210 CACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCC 364269 |||| || || || | ||||||||| || |||| | | || ||||| | ||| Sbjct 981 AACCTCGGCACGATCCGCTCGAGCAACCTCTGCTGCGAGGTGCTCGAGTACACGTCGCCC 922 Query 364270 GACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATG-- 364327 |||||| || || || ||||| ||||| |||||||| | |||||| || || | Sbjct 921 GACGAGGTCGCGGTGTGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTGAACGACGAC 862 Query 364328 -GTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGAC 364386 || || ||| | || | || || ||| | ||| | | || |||| ||| || Sbjct 861 AAGACCTTCGACTTCAAGAAGCTGTACGACATCACCAAGGTCGTCACGCGCAACCTCAAC 802 Query 364387 AAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCG 364430 ||||| ||||||| || || || || || || || |||||||| Sbjct 801 AAGGTCATCGACATCAACTACTACCCGATCCCCGAGGCCGAGCG 758 >seq875 Length=8764 Score = 140 bits (154), Expect = 8e-28 Identities = 301/448 (67%), Gaps = 4/448 (1%) Strand=Plus/Minus Query 111426 ATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACG-- 111483 ||||||||||| |||||||| || | || || | ||||| | |||| || Sbjct 7070 ATTTGGGATGGCAATGGATCCAAGGAATACCTGGAAAGCATCGGTCTCG--GACATCGTG 7013 Query 111484 AAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACA 111543 ||| || |||||||||||||| || || || || ||||||||||||||||| | |||| Sbjct 7012 AAGCTGGCGATCTCGGACCAGTGTATGGCTTCCAGTGGCGCCACTTTGGTGCCAAGTACA 6953 Query 111544 AAACCATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATC 111603 |||||||||| | || |||||| || || || | | |||||| | Sbjct 6952 CGACCATGCACGCCGACTACTCGGGCCAGGGAGTCGACCAGCTAGCGGAGGTCATTCACA 6893 Query 111604 AAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT 111663 | | |||| ||||||| ||||||||| || ||| ||||||||||| | Sbjct 6892 AGCTCAAGACGAACCCAAACGATCGTCGCATCATCATGTCGGCATGGAACCCTGCGGACC 6833 Query 111664 TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGA 111723 | | | ||||| || || || ||||| | | |||||||| || || | |||| Sbjct 6832 TCAAGGAGATGGCGCTGCCGCCGTGTCACATGTTCTGCCAGTTCTACGTCGCCAACGGCG 6773 Query 111724 TGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783 ||| || ||||| ||||| ||||| || ||||| || || || || || || ||||| | Sbjct 6772 AGCTCTCGTGCCAGATGTACCAGCGCTCAGCTGACATGGGACTCGGCGTGCCTTTTAACA 6713 Query 111784 TTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTG 111843 |||| || || || || | ||| | | ||||| || | ||| || | || | Sbjct 6712 TTGCGAGCTATGCGCTGTTGACTCGACTCATCGCGCAGGTCACAGGGCTGCGTGCTGGAG 6653 Query 111844 AATTCATTCACGTTATCGGAGATGCGCA 111871 | ||||| ||| ||||| |||||||| Sbjct 6652 ACTTCATCCACACGATCGGCGATGCGCA 6625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303110192198432