Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq422 167 2e-36 seq170 134 1e-26 seq756 82.4 7e-11 >seq422 Length=12968 Score = 167 bits (184), Expect = 2e-36 Identities = 574/878 (65%), Gaps = 33/878 (4%) Strand=Plus/Plus Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGG-CGTCGCTGTATTGTACGATCTC 145683 ||||| ||||| | || || || || ||| |||| || || |||| | | | ||| Sbjct 887 GCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACG-TGTACTCGAGCACCTC 945 Query 145684 GGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCA 145743 | ||| | ||||| | ||| || || || || ||||| || || | ||| || Sbjct 946 GCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACA 1005 Query 145744 CGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA---AA 145800 || ||||||||| ||||||||||| ||| ||||| | ||||| ||| | ||| || Sbjct 1006 CGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAA 1065 Query 145801 ACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCT 145860 | | || | |||||| || | | || | ||||||||| ||||| | Sbjct 1066 CCAGAGC---TGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTG 1122 Query 145861 GTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACA 145920 ||| ||| |||| ||| || ||| | | | || || || || ||| || || Sbjct 1123 GTACAGCGCCTCGAACTCGTCACCCCACGTCGTGTAGAGACCCGGTGCCTCGTTCGGGCA 1182 Query 145921 CATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAG 145980 | ||| ||| |||||||||| | ||||||| ||| || | ||| || | ||||| Sbjct 1183 GAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACAT 1242 Query 145981 CGCGTACATCAAGTCGCG--CGCTTTGCAATCCTCAGCACCCATGTTTCG-CTTCAAATT 146037 |||||| | || || || ||| |||| ||| | || || ||| ||| | | Sbjct 1243 CGCGTAGAACAGATCACGAGCGCGGTGCAG--CTC-GTTGCCGTGGTTCTTCTTGAGGTC 1299 Query 146038 AAGCACACTATA-GATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTC 146096 || | ||| | |||||| ||||||||||| || | ||| | |||| | || || | Sbjct 1300 GAGGA-ACTCGAAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGC 1358 Query 146097 GTTTGCC---ACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCT 146153 | ||||| |||||| ||||| | ||| || ||| ||| || ||||||| ||||||| Sbjct 1359 GCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCA 1418 Query 146154 CGACGCCGCTGGCTACGCCGTTCGTAGA--GTTTATTCTGGT--GCCGCGGGAGCGCACG 146209 ||| |||| | | ||||||||| | | | | || | |||| || | | Sbjct 1419 CGAGGCCGTTCGACGAGCCGTTCGTGCCACGGATGTACGAGTTGGTCGCG----CGGATG 1474 Query 146210 CAATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGC 146269 || || | || || | |||||| | ||||||| || |||||| | |||| Sbjct 1475 TTGTGCACGCTGACACCAATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGC 1534 Query 146270 GTCTCGTAGATGCCGTCAAT---GCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCAC 146326 || || |||||||| || || | ||| |||| ||| ||||||| |||||||| || Sbjct 1535 GTGTCATAGATGCCCTCGATCGAGTCATC-CTTC--ATGGCGAGCAGGAAGCACGACGAC 1591 Query 146327 ATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTT 146386 | ||||| |||||| || || ||||| |||||| |||||||||| || | || Sbjct 1592 AGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTT 1651 Query 146387 CGGCTCATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAA 146446 | ||| | ||||| |||| ||| | | ||||| | || ||||| | | Sbjct 1652 TGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACA 1711 Query 146447 GCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCAC 146484 |||||||||| | ||| || || || ||||| || || Sbjct 1712 GCGACGCGCAGAATCATCTGCTGCGGGCGCTCAGCGAC 1749 Score = 132 bits (146), Expect = 5e-26 Identities = 359/543 (66%), Gaps = 11/543 (2%) Strand=Plus/Plus Query 144758 TAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGACGTCATCAGA 144817 |||||||| ||||| ||||| ||| ||| | |||| ||| || ||||||| | Sbjct 4 TAGTACATACCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAGCTTG 63 Query 144818 GCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAATGAAAGCGTTG 144877 | ||| |||||||| | || ||| ||||| ||||| || ||| | ||| | Sbjct 64 CTGATCGTCGGCTCCGCGATGTGCACATTGAGCGACTGGCTCTGGCAGATGTAGGCGCCG 123 Query 144878 CGGTCGGCGGCCATCTCAATCATA--CGTTTGCATTTCATTTCCCAAGCGGTCTTGTACA 144935 |||||||||||||| || | || | | ||| || || ||||| | ||||||||| Sbjct 124 CGGTCGGCGGCCATGTCGAGCACGGCCTTCTGC--TTGATCTCCCACACCGTCTTGTACT 181 Query 144936 AACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTGT-GCGCAA-A 144993 || | | ||||| || | | ||| | || || | || | ||| | Sbjct 182 TCTCCTTCACGGCATCCGGGATCACACGCACGTTCTGCACTGAGCCGTGGTCGTGCAGGA 241 Query 144994 TATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCGTCAATTAAGTA 145053 | ||| || |||| |||| ||| | | | || ||| | || | || | ||| Sbjct 242 TCTGG--TTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATCAGGTA 299 Query 145054 CTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAA 145113 || || |||| | |||||||| || | ||| || || |||| ||| | |||||| Sbjct 300 CTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGAA 359 Query 145114 GGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGC 145173 || || | |||||||| ||||| ||||| || ||||||| || || ||||| ||| Sbjct 360 CGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGC 419 Query 145174 CACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATC 145233 | || | || ||||||| ||||| || | || | |||| |||| |||| || Sbjct 420 GAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCGGCCCAGTC 479 Query 145234 CCATAGC---GAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGC 145290 ||| || || |||||| | ||| |||||||||||||||| || ||||||| ||| | Sbjct 480 CCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCCCTTGCTCAC 539 Query 145291 GGG 145293 ||| Sbjct 540 GGG 542 >seq170 Length=18893 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| | || | ||||||||||| || |||||||| || Sbjct 6684 CCACCACGAAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 6625 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||| ||||||||| Sbjct 6624 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGG 6565 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| |||||||||| | || | | || | | ||||| | Sbjct 6564 ATTCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACG 6505 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || ||||| ||||| || ||||| |||||||| Sbjct 6504 TCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 6458 >seq756 Length=9614 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACA---GCAGCACC 46140 || || || |||| ||||| || |||||||| | |||||| | || || || || Sbjct 2642 ATCCCTTGTGTGCAGAAGAAGGCCCACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCGCC 2583 Query 46141 GCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGC 46200 ||| |||||||||||||| || || || || || |||||| |||| || || ||| Sbjct 2582 GCG---TTCGCCGAGCGTATCGTCGCGTTCGCTGCCGTCGAGGGCATCTTCTTCTCGGGC 2526 Query 46201 -AGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAG 46259 ||| || | | ||||| | |||| | ||| | ||||| ||||| | || Sbjct 2525 TCGTTCTG-CTCTATCTTCTGGCTCAAGAAGCGCGGCCTTATGCCTGGCCTCAGCTTCTC 2467 Query 46260 CAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 |||||||| || ||||| |||||||| || || ||||| ||||| || Sbjct 2466 GAACGAGCTCATCTCGCGTGACGAGGGTCTCCACTGCGACTTCGCGTGCCT 2416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471926799267840