Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq36 185 2e-41 seq756 138 2e-27 seq3138 131 3e-25 >seq36 Length=34223 Score = 185 bits (204), Expect = 2e-41 Identities = 450/673 (67%), Gaps = 18/673 (3%) Strand=Plus/Plus Query 279691 TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTC 279750 |||| || ||| | || || |||||||||||||||||||| | | | || ||||| | Sbjct 9650 TGCCTGTCGGTGCCCTCTCTGGTGGTTGGAAGATGAAGCTCGAGTTGGCCCGTGCCATGC 9709 Query 279751 TACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACG 279810 | || || ||| |||| || ||||||||||| || |||||| |||| ||||| Sbjct 9710 TCATGAAGGCTGATATCCTCCTTCTTGATGAGCCGACGAACCACTTGGATGTGCACAACG 9769 Query 279811 TAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 | ||||| | | |||||| || || || | ||| || | || ||||| || || | Sbjct 9770 TCAAGTGGCTCGAGGACTACCTCACGAGCCTCACGAACGTGACGTCGCTCATCGTGTCGC 9829 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 |||||||||| ||||| || | || ||| | |||||| ||||| ||| || | | Sbjct 9830 ACGACTCTGGTTTCCTCGACACGGTCTGCACGAACATCATCCACTACGAG---AACCGTA 9886 Query 279931 AGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGC 279988 ||||| | | ||| || ||||| || | ||||| ||| || || ||||| Sbjct 9887 AGCTCAAGACGTACAAGGGTAACCTCTCCGAGTTCGT--CAAGCAGAAGCCGGAGGCCAA 9944 Query 279989 CGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCT 280048 | ||||| || || ||| ||| || ||||| ||||||||||| || || || Sbjct 9945 GACGTACTACGAGCTTGAGGCCGCTGCCTTCAAGTTCACGTTCCCTGAGCCGGGTTTCCT 10004 Query 280049 GGAGGGCATC-ACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTT 280107 | | ||| | | ||| || || | ||||| ||| | ||| | | Sbjct 10005 TGCTGATATCAAGAACAAGGGTAAGC-CGATCATTCGTCTCACGAACTGCTCGTACCAGT 10063 Query 280108 ATCCCAATGGCCCCAACA--TCTTC-AGCAGTG---TCAACTCGCAGGTTTCTATGAACT 280161 | || ||||| | ||| | || | | ||| ||||| | | ||| || || Sbjct 10064 ACCC---TGGCCGCGACAAGCCGTCGATCCGTGACATCAACGTGACGTGTTCGCTGGCCT 10120 Query 280162 CACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGA 280221 | || |||| || || || || || ||||| |||||||| || || ||||| | |||| Sbjct 10121 CGCGTATTGCCGTTATCGGTCCGAACGGTGCCGGTAAGTCGACGCTCATCAAGATGCTGA 10180 Query 280222 CTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTT 280281 | || ||| | || | || | || | || |||||||| || |||||| | || | Sbjct 10181 CGGGTGAGGTCGAGCCTACGGTCGGTACGGTGTGGAAGCACCCGGCCATGCGTTTCGCCT 10240 Query 280282 ACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAAT 280341 |||| || |||||||||||||||||||| ||| | ||||| ||||| || | ||||| | Sbjct 10241 ACGTTGCCCAGCACGCTTTCCACCACATTGAGGAGCACCTCGACATTACGGCCAACCAGT 10300 Query 280342 ACATTCAGTGGCG 280354 | || |||||||| Sbjct 10301 ATATCCAGTGGCG 10313 Score = 114 bits (126), Expect = 3e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 |||||| || |||| || ||||||||||| || ||||| | ||||||||| ||| | Sbjct 9312 GGATCTCTGCAACTGCGAGTTCTCGCTCGCGTACGGTGGTATGATTCTGCTGAACAACGC 9371 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| ||| | ||||||||||| |||| || |||||| ||| || || || ||||| Sbjct 9372 CCGTCTCCGCCTCAAGCGTGGCCACCGCTACGGTCTCTGCGGCCCGAACGGTTGCGGTAA 9431 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTG 279528 | || || ||||||||||| | ||||| ||||| | ||| ||||| || || || Sbjct 9432 GTCGACGCTTATGCGCGCCATCTCGAACGGCCAGCTCG-AGGGTTTCCCGACCCAGGATG 9490 Query 279529 AGGTAAGGACAGTGTATGTAGAGCACGACATC 279560 || | | ||| || | || |||||| || || Sbjct 9491 AGCTCAAGACGGTCTTCGTCGAGCACAACCTC 9522 >seq756 Length=9614 Score = 138 bits (152), Expect = 2e-27 Identities = 535/828 (65%), Gaps = 32/828 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | ||||| ||||||| ||||| | Sbjct 2152 TCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATCCAGTCGAACGGGTTCGAC 2211 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | |||||| || || || ||| || || ||||| | Sbjct 2212 ACCTTGTAGATCTTGGCAACGCCAAGCGCGTGGAGGAGGCGATCGGCGCAGAACTCAATG 2271 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || |||||||| || || | | || ||| | || || Sbjct 2272 TACTGGCACATGAGAGACGAGTTCATACCGATGAGCTCCACCGGGAGC-GAGTCCTGGAC 2330 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTG--TGCCAGAGAC 251799 ||| ||||| ||| | || || || || | | || || | || ||| ||| | Sbjct 2331 GAACTCCTTCTCGATCGCGACAGCATCG----CGAATGA--TCTCGTGGATGCGAGACTC 2384 Query 251800 ----AGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTG--GTGCAGACC 251852 |||||||| | ||||| |||||||| || | ||| || || | ||| ||||| Sbjct 2385 GGGGAGCTTGTTGGCGAGCTTGGAGTACAGCAGGCACGCGAA---GTCGCAGTGGAGACC 2441 Query 251853 CTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCT 251912 |||||| || ||||| |||||| || | | ||||||||||| | || || ||| | Sbjct 2442 CTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATAAGGCCGCGCTTCTT 2501 Query 251913 GAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGC 251972 |||||||||||| | ||| || || || ||||| | | |||||||| | | || Sbjct 2502 GAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCAGCGAACGC 2561 Query 251973 AACAAGGCGCTCAGCAAACGACTTGTCCTGCGA---CAAGAACTTCTGTGCCCATGCTGC 252029 || | ||||| || |||| | |||| | |||| | ||||| || Sbjct 2562 GACGATACGCTCGGCGAACGCGGCGCGGCGCGAGTCGCACCACTTGAGCGCCCAGTGGGC 2621 Query 252030 CTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATC 252089 |||||| || ||||| || ||||| || | || |||| ||||| | Sbjct 2622 CTTCTTCTGCACACAAGGGATCGTCTCGATGGCGCGGAGAAGGTGGTTCTTCTCGGTCTG 2681 Query 252090 GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAA 252149 ||||| |||| || || | || || ||||||| |||||| |||||| || | Sbjct 2682 GTCCTTGATGTACGTGTCGATGAGCAGCGAGTACACCTCCGAGTGGATGTTCTCAATCGC 2741 Query 252150 CATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTT 252209 |||||| | | ||||| |||||| ||| | || || || ||||| | Sbjct 2742 AATCTGGAAGCCGTAGAAGCAACGCGCCTCAGGAACCTGCACCTCGCTGCTGAAGTTCAT 2801 Query 252210 TGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGAT 252269 || | |||||| | || |||||||| ||| | || ||||| | || | | |||||| Sbjct 2802 CGCGAGGTTCTCGTTGACGATGCCATCACTGGCCGCGAAGAACGCGAGCACGTGCTTGAT 2861 Query 252270 GAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCA-GAG 252328 |||| ||||| | ||| |||| |||| |||||| | ||| || || ||| Sbjct 2862 AAAGTAGCGCTCGTTGTCCGTGAGGTTGT---TCCAGTCCTTGAGGTCGTG---CACGAG 2915 Query 252329 G--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 | | ||||| |||||||||| | | | | |||||||||||||| Sbjct 2916 GTCGATCTCTTCAGCCGTCCAGAAGCTCGCCTCAGCCTTCTTGTACAT 2963 >seq3138 Length=2987 Score = 131 bits (144), Expect = 3e-25 Identities = 245/359 (68%), Gaps = 1/359 (0%) Strand=Plus/Minus Query 218650 GAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGT 218709 ||||||||||| |||||| || ||| || || ||||| ||||| ||||| |||||| Sbjct 1874 GAAATTAAGGTTGCTCAGCTTGGTGGATACGTGTCCGAGCATTCTGCGTACCACCACGGT 1815 Query 218710 GAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAAC 218769 || |||||||| | || | ||| | |||||| || || | |||||| || |||||| Sbjct 1814 GAACAGAGTCTCAACGGCACGATTATCAACATGGCCCAAGATTTTGTGGGAAGCAACAAC 1755 Query 218770 ATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGT 218829 || | || || || ||||||||||||||| |||| ||| |||||| || ||| Sbjct 1754 ATCCATCTGTTGTCTCCAAACGGTCAGTTTGGTACTCGACTAGCGGGTGGTAAAGATGCA 1695 Query 218830 GCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAG 218889 || || | | || |||||||| || | || | || || | | ||| | | Sbjct 1694 GCATCGCCTCGTTACATCTTTACGAACCTCGAGCAACTCACACGACGCATCTTCGACCCT 1635 Query 218890 GCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGG 218949 ||| | | | | | ||||| || || ||||| ||||||||||| || ||| Sbjct 1634 CTGGATAACGACAACTTGACATATCTCGACGATGATGGACAGTCGATTGAGCCTGAATGG 1575 Query 218950 TATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTT 219008 ||||| || ||||| | ||||| ||||||| | | |||||||| || ||||| Sbjct 1574 TATGTTCCGATCATTCCAATGGCACTCGTCAATGGTGGCGAGGGTATCGGCAC-GGGTT 1517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027644846338416