Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq756 349 7e-91 seq422 293 4e-74 >seq756 Length=9614 Score = 349 bits (386), Expect = 7e-91 Identities = 521/735 (71%), Gaps = 11/735 (1%) Strand=Plus/Minus Query 42412 TCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCA 42471 |||| || | || || |||||||| ||| ||| ||||| ||||| |||||||| || | Sbjct 2860 TCAAGCACGTGCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCGCGA 2801 Query 42472 CCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAG 42531 | |||| | ||||||||| ||||||||| |||||||||||||||||||| | Sbjct 2800 TGAACTTCAGCAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTACGGCTTCCAGATTG 2741 Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGG 42588 | || |||||| | ||||| ||||||||| | ||||||| ||||||||||| || Sbjct 2740 CGATTGAGAACATCCACTCGGAGGTGTACTCG---CTGCTCATCGACACGTACATCAAGG 2684 Query 42589 ATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGA 42648 | | |||| ||| || || ||||| |||||||| || || | |||||| Sbjct 2683 ACCAGACCGAGAAGAACCACCTTCTCCGCGCCATCGAGACGATCCCTTGTGTGCAGAAGA 2624 Query 42649 AGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGG 42708 |||| ||||||||||||| ||| ||| | | ||| |||||| |||| | | | Sbjct 2623 AGGCCCACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCGCCGCGTTCGCCGAGCGTATCG 2564 Query 42709 TAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGC 42768 | || || | ||||||||||||||||||||||||||| | ||| ||| |||||||||| Sbjct 2563 TCGCGTTCGCTGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCTATCTTCTGGC 2504 Query 42769 TCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACG 42828 ||||| || | ||||| || |||| |||||||||||| |||||| | |||| Sbjct 2503 TCAAGAAGCGCGGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACG 2444 Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| || || | ||||| || ||||| |||| ||| | | ||| |||||| | Sbjct 2443 AGGGTCTCCACTGCGACTTCGCGTGCCTGCTGTACTC---CAAGCTCGCCAACAAGCTCC 2387 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 | || || ||| | ||||| || || || | |||||||||||||||| || Sbjct 2386 CCGAGTCTCGCATCCACGAGATCATTCGCGATGCTGTCGCGATCGAGAAGGAGTTCGTCC 2327 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATC 43007 | | ||||| || ||| || |||| ||||| | || | ||||||||| ||||||| Sbjct 2326 AGGACTCGCTCCCGGTGGAGCTCATCGGTATGAA-CTCGTCTCTCATGTGCCAGTACATT 2268 Query 43008 CAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCG 43067 ||| | |||||| | ||||| | | | || | | ||||||| | || Sbjct 2267 GAGTTCTGCGCCGATCGCCTCCTCCACGCGCTTGGCGTTGCCAAGATCTACAAGGTGTCG 2208 Query 43068 TGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAG 43127 ||| ||||||| ||||| | |||||| | |||||||||||||||| ||||||||| Sbjct 2207 AACCCGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAG 2148 Query 43128 CGCGTCGCCGACTAC 43142 ||||| | ||| ||| Sbjct 2147 CGCGTGGGCGAGTAC 2133 >seq422 Length=12968 Score = 293 bits (324), Expect = 4e-74 Identities = 856/1294 (66%), Gaps = 47/1294 (4%) Strand=Plus/Plus Query 244540 GGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCAT 244599 ||| ||||| | ||||| ||||| |||||| ||||||||||||||||| |||| | Sbjct 763 GGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGAC 822 Query 244600 GCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGAT 244659 | || |||| |||| || |||||| | || || | || | || Sbjct 823 CTTGGTGATGTCGTACAGCTTCTTGAAGTCGAAG--GT-------CTTGTCG-TCGT--- 869 Query 244660 CCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTT 244719 ||||||||| | || |||| | || |||||||| || || ||||| || | Sbjct 870 --TCACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGA 927 Query 244720 GGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTG 244779 ||||||| || | |||| ||||||||| || | ||| ||||| |||| ||| || Sbjct 928 CGTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTG 987 Query 244780 ATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839 || |||||| ||| || | ||||||||| |||||| | ||| || ||||||| ||| Sbjct 988 GTTCGACTTGCGGTTACACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTG 1047 Query 244840 GGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCT 244898 | |||||| ||| | |||||| | | || || |||| |||| || ||||| Sbjct 1048 CGACTCGAGGATCGC-GAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCT 1106 Query 244899 CTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAG-GCCG 244957 | |||||| || |||||| |||||||||||| |||| || |||| ||| | | Sbjct 1107 CGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCACCCC--ACGTCGTGTAGAGACC 1164 Query 244958 GGGCACGACG-CCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAA 245016 || | || |||||| | || |||||||||||| | ||| || | || |||||| Sbjct 1165 CGGTGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAA 1224 Query 245017 GAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGT 245076 ||| ||||| ||||| | || | ||| || || | | | ||| || ||| Sbjct 1225 GAGATCGGGAATCCACATCGCGTAGAACAGATCACGAGCGCGGTGCAGCTCGTTGCCGTG 1284 Query 245077 GTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGC 245136 ||||||| | || || | || || |||| |||| ||||||| ||||| | || | || Sbjct 1285 GTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGATACATCGC 1344 Query 245137 GAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGAT 245196 || | ||| |||||| ||| ||||| ||||| | | | ||||||| | Sbjct 1345 GAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACAC 1404 Query 245197 GCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTT 245256 |||||| | ||||| | |||||| || |||||| ||||| |||||| | | | Sbjct 1405 GCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCACGGATGTACGAGTTGGT 1464 Query 245257 GCCCCTGAGGTTGCTGATG--GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCG 245314 | | || |||| | | |||| || | |||||||| |||||||||| |||| Sbjct 1465 CGCGCGGATGTTGTGCACGCTGACA--CCAATGCCGCCGGCCCACTTGGAGATGCAGGCG 1522 Query 245315 CAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAG 245374 || ||||| ||||| |||||||| || ||| ||||||| |||||| ||| Sbjct 1523 CACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCATCCTTCATGGCGAGCAGGAAG 1582 Query 245375 CAGGAGGACAGCTG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGT 245433 || || |||||||| |||| || | ||| | ||||||||| || || | ||||| || Sbjct 1583 CACGACGACAGCTGCGGGCGCGGCG-TGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGT 1641 Query 245434 AAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTG 245493 ||| ||| ||| | | || ||||||||| |||| |||||||||| | ||| Sbjct 1642 GAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTG 1701 Query 245494 GAT--CTGCAG-GGCGCACCTCATGAGGGTGTGCTG-GGGCG-TC-TCGATGGGTCCCTC 245547 ||| | ||| | ||| | || | | ||||| ||||| || ||| || | Sbjct 1702 GATGCCGACAGCGACGCGCAGAATCA---TCTGCTGCGGGCGCTCAGCGACCTTGCCACC 1758 Query 245548 GGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAA 245607 | | | || | ||| || ||||||||||||||| |||||||| ||| |||| Sbjct 1759 GACGCGC---AGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAA 1815 Query 245608 GTCGGCGTGGTGCCTGACGGCTGCGTCGAGTCTCTCGGCGTGCTTC-TGACTGACCTCGT 245666 |||| || ||| ||| || | || ||| | || ||||| | ||| ||| || || Sbjct 1816 GTCGCGGTCGTGGATGATCGCCGAGTTGAGGCGGTCCTTGTGCTCCATGA-TGATCTGGT 1874 Query 245667 AAAACTTTTGCGCTATGAGGGGAGCCCTGAGCCCGG---TGTCCGGATTGACGTTGAACC 245723 | | | | ||| || || || ||| || |||| | || | ||| | | | Sbjct 1875 AGACGTCCTCCGCGATCAGCGGCGCCGGCAGTCCGGTCTTCTCGTGCTTGTTCTGGTAGA 1934 Query 245724 AGAGCCTCTTGCACACCTCCGAGAACTTGGGGCTGGTGAGCTTATGCAGGTTGGTGACTG 245783 ||||| || |||||||||| | ||||| ||| |||||||| | || | Sbjct 1935 AGAGCTCAATG---TTCTCCGAGAACAGCTTGTTGGTGTTCTTGTGCAGGTTCGAGATCG 1991 Query 245784 CTATGCGCGCCGCCAACTTGCTGTAGTCGGGGTG 245817 ||||||||||| | |||||| |||||||||| Sbjct 1992 AGATGCGCGCCGCGAGCTTGCTAAAGTCGGGGTG 2025 Score = 201 bits (222), Expect = 2e-46 Identities = 403/593 (68%), Gaps = 26/593 (4%) Strand=Plus/Plus Query 243776 AGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGC 243835 ||||||||||| || |||||||| || | ||| |||| || |||||||| ||||||| Sbjct 1 AGGTAGTACATACCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAGC 60 Query 243836 TTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGG 243895 || | ||| | ||| | | || ||||| ||||| |||||||||||| Sbjct 61 TTGCTGATCGTCGGCTCCGCGATGT----GCACA--------TTGAGCGACTGGCTCTGG 108 Query 243896 TCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATA 243954 || | ||| |||| || || ||||||||| || | | ||||||| ||||| | Sbjct 109 CAGATGTAGG-CGCCGCGGTCGGCGGCCATGTCGAGCACGGCCTTCTGCTTGATCTCCCA 167 Query 243955 CGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCC 244014 | |||||||||| | ||| | | || |||| | | | ||||||||| ||||| Sbjct 168 CACCGTCTTGTACTTCTCCTTCACGGCATCCGGGATCACACGCACGTTCTGCACTGAGCC 227 Query 244015 CTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCA---G 244071 | || | | || |||| |||||| | |||| | ||| | |||| | | Sbjct 228 GTGGTCGTGCAGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCCGA---GCTCGATGAG 284 Query 244072 CGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTA 244131 | ||| | ||||| | ||||||| | | ||||| || | ||||||||||| | ||| Sbjct 285 CTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTA 344 Query 244132 GAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGC 244191 | |||| | ||| ||||||||| ||| ||||||| || |||||||| || ||| Sbjct 345 CATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGC 404 Query 244192 AGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCT 244251 |||||||| |||| | |||||| ||| | |||||||| | | || || | | Sbjct 405 CGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTT 464 Query 244252 GAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAA 244311 |||| || ||||||||| | ||| || | ||| | ||| |||||||||||| | Sbjct 465 GAGCGCGGCCCAGTCCCAGAGGCC-----GGACGTCG-GCGTGACGCCCCACATGTCGTA 518 Query 244312 CTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT 244364 ||| | | |||||||| ||||| |||||||||| | | ||| || |||| Sbjct 519 CTGGAAGATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGT 571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944167141397760