Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq422 309 3e-79 >seq422 Length=12968 Score = 309 bits (342), Expect = 3e-79 Identities = 651/954 (68%), Gaps = 30/954 (3%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||| ||||||| |||||| || || ||||||||||||||||| | | ||||| | Sbjct 1809 TACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCTCCTGCGCGTCGGTGGCAAG 1750 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || | ||||| ||||| ||| || | |||||||||| |||| || ||| || ||| Sbjct 1749 GTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCACAAGCATGAC 1690 Query 93838 AT----GCCGAATGTTTTGCGGGCTTTCAGAG-ACATGCGGGACAAGAGGTATACCATG- 93891 || |||| | | || | | ||| ||||| | ||| || | || | Sbjct 1689 ATCGACGCCGC--GCT---CGAGACGTACGAGTACATGTCG--CAA-AGCTTCTTCACGC 1638 Query 93892 --GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCC 93949 || || ||||| ||||||||||| || || ||| || ||| |||| ||||| |||| Sbjct 1637 ACGCGACGCCGACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCC 1578 Query 93950 TGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009 || | | | |||| ||||| ||| || || | |||| |||||| | || || Sbjct 1577 TGCTCGCCATGAAGGATGACTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCCT 1518 Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069 |||||| || | || || || || || |||| || ||| || | || || | | Sbjct 1517 GCATCTCCAAGTGGGCCGGCGGCATTGGTGTCAGCGTGCACAACATCCGCGCGACCAACT 1458 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 | |||||||| || || || ||| | || ||||||||||| || ||||| || || |||| Sbjct 1457 CGTACATCCGTGGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCA 1398 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 || || ||||||| || ||||| |||||||| || | | | ||||| || |||||| | | Sbjct 1397 ACGACACGGCGCGTTATGTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGT 1338 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 |||||||||| |||||||| ||| | | ||| ||||||| ||||||||||||| Sbjct 1337 ATCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCA 1278 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 |||| ||| | | || | || || |||||||| | ||| | || || || || |||| Sbjct 1277 ACGAGCTGCACCGCGCTCGTGATCTGTTCTACGCGATGTGGATTCCCGATCTCTTCATGA 1218 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | ||||| ||| ||| || ||||| || || || || || || || || || | Sbjct 1217 AGCGCGTTGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCACCGGGTCTCT 1158 Query 94370 --CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCA 94426 |||||| | || || | || || | |||| | |||| | ||| ||||| Sbjct 1157 ACACGACGTGGGGTGA-CGAG-TTCGAGGCGCTGTACCACCAGTACG-AGCGCGAGGGCC 1101 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 || | ||| || || | |||| ||| |||| | || ||| | | Sbjct 1100 GCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCG 1041 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTC-TGTCAACGCCAAGTCCAACCAGCAG 94545 ||||||| ||||| ||||| ||| ||||||||| ||| ||| |||||| ||||||||| Sbjct 1040 AGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGT-AACCGCAAGTCGAACCAGCAG 982 Query 94546 CACCTCGGGGTGATCAAGAGCTCG---AATCTGTGCACCGAGATTGTCGAGTATACTTCT 94602 ||||||| |||| ||||| || || ||| |||| | ||||||| || || Sbjct 981 AACCTCGGCACGATC---CGCTCGAGCAACCTCTGCTGCGAGGTGCTCGAGTACACGTCG 925 Query 94603 CCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTG 94656 || |||||| | || ||||| ||||| | |||||| ||||||| || ||| Sbjct 924 CCCGACGAGGTCGCGGTGTGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTG 871 Score = 174 bits (192), Expect = 2e-38 Identities = 300/442 (68%), Gaps = 0/442 (0%) Strand=Plus/Minus Query 95078 ACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCC 95137 |||| ||| ||| ||||||| | || || ||||| ||||| || || |||||||||| Sbjct 445 ACGGCGTGCGCAACTCGCTGCTGCTCGCGCCGATGCCGACGGCGTCGACCGCGCAGATCC 386 Query 95138 TTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCG 95197 | ||||||||||||||| |||| || ||||| ||||| |||||||| | || ||||| | Sbjct 385 TCGGCAACAACGAGTCGATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTTG 326 Query 95198 CCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGT 95257 | || || ||| | || | |||||| |||| | ||| || | || || | | Sbjct 325 CAGGCGAGTTCACGATCGTGAACAAGTACCTGATGAAGGAGCTCATCGAGCTCGGCATCT 266 Query 95258 GGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGC 95317 || | |||| ||||| | || | || | ||||||| || |||||| | | Sbjct 265 GGACGCCCGAGGTGCGCAACCAGATCCTGCACGACCACGGCTCAGTGCAGAACGTGCGTG 206 Query 95318 AAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGA 95377 || ||||| | | | |||| | |||||||| |||||||||||| |||| | Sbjct 205 TGATCCCGGATGCCGTGAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGGCCG 146 Query 95378 TACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNN 95437 | |||||| || |||| |||||| ||| |||||||||||| Sbjct 145 TGCTCGACATGGCCGCCGACCGCGGCGCCTACATCTGCCAGAGCCAGTCGCTCAATGTGC 86 Query 95438 NNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGG 95497 || || ||||| | | | || | ||||||||| ||||||| ||||| |||| Sbjct 85 ACATCGCGGAGCCGACGATCAGCAAGCTGACGTCCATGCACTTCTACGCGTGGAAGAAGG 26 Query 95498 GTCTCAAGACCGGTATGTATTA 95519 |||||||||| |||||||| || Sbjct 25 GTCTCAAGACGGGTATGTACTA 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494633061432960