Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq422 199 4e-46 seq756 154 1e-32 seq170 102 8e-17 >seq422 Length=12968 Score = 199 bits (220), Expect = 4e-46 Identities = 661/1011 (65%), Gaps = 24/1011 (2%) Strand=Plus/Plus Query 153458 GTTGCTGCGCCTCGCGCTCGCT-ATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGT 153516 |||||| ||| ||| |||| || || |||| ||| ||||| | |||||||||| Sbjct 751 GTTGCTTCGC-TCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGT 809 Query 153517 TGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGA 153576 ||||| || || || || || | | || |||| ||| || ||||| | |||||| Sbjct 810 TGCGCGTGACGACCTTGGTGATGTCGTACAGCTTCTTGAAGTCGAAGGTCTTGTCGTCGT 869 Query 153577 CGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGG-CG 153635 | | | | || || || || ||||| || || || || || ||| |||| || Sbjct 870 T-CACAAACTTGGA--CAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCG 926 Query 153636 TCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGC 153695 || |||||| | | |||| |||||||||||| | || ||| | || ||| Sbjct 927 ACG-TGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGC 985 Query 153696 TGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACT 153755 || || ||||| || |||| ||| ||| | ||||||||||| ||| ||||||| Sbjct 986 TGGTTCGACTTGCGGTTACACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATC 1045 Query 153756 TGCGTTTCGACGATA---AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGG 153812 |||| |||| ||| |||| || | |||||| || | | || || |||| Sbjct 1046 TGCGACTCGAGGATCGCGAACCAGAGCTG---CTGCGCGCGGATCGTCTTGCGCGCGCGG 1102 Query 153813 CCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTA-GCAGTCGGCGAG 153871 ||||||| |||||| | | |||||| ||| |||||||| || | | || | ||| Sbjct 1103 CCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCACCCCACGTCGT-GTAGAG 1161 Query 153872 GCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCAT 153931 || || || | ||| || | ||| |||| ||| ||| | ||||| ||| Sbjct 1162 ACCCGGTGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCAT 1221 Query 153932 GAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCG--CGCCTTGCAATCCTCCGCG 153989 ||| ||||| || | ||| | |||||| | || || || ||| |||| ||| | Sbjct 1222 GAAGAGATCGGGAATCCACATCGCGTAGAACAGATCACGAGCGCGGTGCAG--CTCGTTG 1279 Query 153990 CCCATGTTGCGTTTCAGATTGAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTA 154048 || ||| || || | ||| | | | | |||||||||||||||| || || | || Sbjct 1280 CCGTGGTTCTTCTTGAGGTCGAGGAACTCGA-AGATGTCGGCGTGCCACGGCTCGAGATA 1338 Query 154049 GACGGCCAGGGCACCTTTACGCTTTCCGCC---CTGATCGACGTGGCGCACCATATTGTT 154105 | || | | || || ||||| ||||| |||||| || | ||| || | | ||| Sbjct 1339 CATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTT 1398 Query 154106 GAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCT 154165 ||| ||||||| |||||| | |||||| | | | |||||| || | ||| | Sbjct 1399 GAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCACGGATGTACGA 1458 Query 154166 GCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGC 154225 | | ||||| | | |||||| | || |||||||||||| | |||| || ||| Sbjct 1459 GTTGGTCGCGCGGATGTTGTGCACGCTGACACCAATGCCGCCGGCCCACTTGGAGATGCA 1518 Query 154226 AGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAA 154285 ||||| | ||||| |||||||| ||||| || || | | |||||| Sbjct 1519 GGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCATCCTTCATGGCGAGCAG 1578 Query 154286 GAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTG 154345 ||| ||||| ||| ||||| |||| || || || || || || ||||||| Sbjct 1579 GAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTG 1638 Query 154346 CGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCC 154405 ||| || | |||| ||| |||||| |||| ||| | ||||| |||| Sbjct 1639 CGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTT 1698 Query 154406 GTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 ||| ||||||| |||||||||| | ||| |||||||| || || ||||| Sbjct 1699 GTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCGCTCAGCGAC 1749 Score = 105 bits (116), Expect = 7e-18 Identities = 345/525 (66%), Gaps = 11/525 (2%) Strand=Plus/Plus Query 152730 TAATACATGCCCGTTTTGAGGCCGCAGCGCCACGAGTAATTGTGAATCGAAGTCATCACA 152789 || ||||| ||||| ||||| || ||||| ||| ||| || || |||| | Sbjct 4 TAGTACATACCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAGCTTG 63 Query 152790 GCGTACGTCGGTTGCGCCACGAACAGATTAAACGATTGGCTCTGATCTATGAAAGCGTTA 152849 | |||||| | ||| | | || ||| | ||| |||||||| ||| | ||| Sbjct 64 CTGATCGTCGGCTCCGCGATGTGCACATTGAGCGACTGGCTCTGGCAGATGTAGGCGCCG 123 Query 152850 CGGTCGGCCGCCATCTCAATCATG-CGTTTTGCCTTCATCTCCCAGGCGGTTTTGTACAA 152908 |||||||| ||||| || | || | | || ||| || |||||||| | || |||||| Sbjct 124 CGGTCGGCGGCCATGTCGAGCACGGCCTTCTGC-TTGATCTCCCACACCGTCTTGTACTT 182 Query 152909 ATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGT-GTGCAAAAA 152967 | || ||| |||||| || | | |||||| | ||||| | || ||||| | Sbjct 183 CTCCTTCACGGCATCCGGGATCACACGCACGTTCTGCACTGAGCCGTGGTCGTGCAGGAT 242 Query 152968 TAGCGTTTCGTATTTCGGGCGTGTACACGTTCAGTTTAATGAGGTCATCGATCAAGTACT 153027 | ||| || | |||||||| | | | || | ||||| || | |||| ||||| Sbjct 243 CTG-GTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATCAGGTACT 301 Query 153028 GGTTGACCA-CTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086 ||| || | | |||| |||||| || | ||| || | || | ||| | ||||| Sbjct 302 TGTTCACGATCGTGAA-CTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGAAC 360 Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 || || | || ||||| ||||| || || || || || | || |||||||| ||| Sbjct 361 GGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCG 420 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCTGCCAATC 153205 | || || || || |||| ||||| | || ||| | | |||| | ||| ||| || Sbjct 421 AGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGG-CCTTGAGCGCGGCCCAGTC 479 Query 153206 CCACAGCGCCGACGGTGTCG---CGTTCCACATGTCGTACTGTAA 153247 ||| || | |||| | || || ||||||||||||||| || Sbjct 480 CCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAA 524 >seq756 Length=9614 Score = 154 bits (170), Expect = 1e-32 Identities = 505/763 (66%), Gaps = 39/763 (5%) Strand=Plus/Minus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 |||||||||| ||||||||||||||| | ||||||||||| ||| ||| ||||||| | Sbjct 2875 ACGAGCGCTACTTTATCAAGCACGTGCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCA 2816 Query 52153 ACATTAACCTCATCGA-GTACAT--GCAGCGGAACGTTCCGGAACTCGAGGCGCAATACT 52209 || |||||| ||| | || | |||||| | || | || | ||||||| | || Sbjct 2815 ACGAGAACCTCG-CGATGAACTTCAGCAGCG--AGGTGCAGGTTCCTGAGGCGCGTTGCT 2759 Query 52210 TTTATAATTTGCA-AGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATT 52268 | || || || | ||| || ||| | | ||| ||||| ||||| |||||||| Sbjct 2758 TCTACGGCTTCCAGATTGCG-ATTGAGAACATCCACTCGGAGGTGTACTCGCTGCTCATC 2700 Query 52269 GAGCAGCTGATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACG-T 52327 || | || || || || |||| || || || || ||||| ||| | Sbjct 2699 GACACGTACATCAAGGACCAGACCGAGAAGAACCACCTTCTCCGCGCCATCGAG-ACGAT 2641 Query 52328 GCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGA-GCGACACCGCCA 52386 || || || | || ||||| || ||||| | |||||| ||| ||| | | ||| Sbjct 2640 CCCTTGTGTGCAGAAGAAGGCCCACTGGGCGCTCAAGTGGTGCGACTCGCGCCGC-GCCG 2582 Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 || | |||||||| || || || ||||| ||||||||| | || || || ||| | Sbjct 2581 CGTTCGCCGAGCGTATCGTCGCGTTCGCTGCCGTCGAGGGCATCTTCTTCTCGGGCTCGT 2522 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 | | | ||||| | | || | | ||| | ||||| ||||| | ||| |||| Sbjct 2521 TCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTTATGCCTGGCCTCAGCTTCTCGAACG 2462 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACTACAAGA 52563 || | || ||||| ||||| || || ||| ||||| |||||||| |||| |||| Sbjct 2461 AGCTCATCTCGCGTGACGAGGGTCTCCACTGCGACTTCGCGTGCCTGCTGTACTCCAAG- 2403 Query 52564 CGCGCGTGACCGAAAAATTG-----GATTCGGA--CACGATCCTGAGCATGTTCAAGGAG 52616 | || || | || | | ||| | ||||| || ||| | || Sbjct 2402 --CTCG---CCAACAAGCTCCCCGAGTCTCGCATCCACGA----GATCATTCGC---GAT 2355 Query 52617 GCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATG 52676 || || || ||||| |||||||| | || | |||| ||||| ||||| | || ||| Sbjct 2354 GCTGTCGCGATCGAGAAGGAGTTCGTCCAGGACTCGCTCCCGGTGGAGCTCATCGGTATG 2295 Query 52677 AACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC 52736 ||| || ||||||| ||||||| ||||| || ||||| || | ||| Sbjct 2294 AACTCGTCTCTCATGTGCCAGTACATTGAGTTCTGCGCCGATCGCCTCCTCCACGCGCTT 2235 Query 52737 GG-GCAGCCAAAGTACTTCAACGC-TCGCAATCCGTTTGAGTTTATGAACAACATTTCGC 52794 || | ||||| | || ||| | ||| || ||||| || | ||| ||| || |||| Sbjct 2234 GGCGTTGCCAAGAT-CTACAAGGTGTCG-AACCCGTTCGACTGGATGGACATGATCTCGC 2177 Query 52795 TTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | |||||||||||||||| ||||||||||| || |||||||| Sbjct 2176 TCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 2134 >seq170 Length=18893 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| || || |||| Sbjct 6651 GACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 6592 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| || |||||||| || || || ||||| ||| || || || | | Sbjct 6591 AAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTGACA 6532 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | | |||| | | ||| || |||| ||| | ||| || || |||||||| || Sbjct 6531 TTG-TCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTT 6473 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 6472 GACGAAGATCTGCAT 6458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496171980990720