Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq422 156 4e-33 seq170 140 3e-28 >seq422 Length=12968 Score = 156 bits (172), Expect = 4e-33 Identities = 306/448 (68%), Gaps = 6/448 (1%) Strand=Plus/Plus Query 145762 AGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA-- 145819 || |||||||| || |||||||| |||| ||||| ||| ||||| ||| || || Sbjct 1 AGGTAGTACATACCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAGC 60 Query 145820 TGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAG 145879 | | || ||| || || |||| || ||| || || |||||||| ||| | | Sbjct 61 TTGCTGAT--CGTCGGCTCCGCGATGTGCACATTGAGCGACTGGCTCTGGCAGATGTA-G 117 Query 145880 GAGCC-CGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTA 145938 | ||| ||||||||||||||||| | || | ||| || || ||||| | || || Sbjct 118 GCGCCGCGGTCGGCGGCCATGTCGAGCACGGCCTTCTGCTTGATCTCCCACACCGTCTTG 177 Query 145939 AAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCC 145998 | ||||| ||| | || || | | ||||||||| || || | ||| | Sbjct 178 TACTTCTCCTTCACGGCATCCGGGATCACACGCACGTTCTGCACTGAGCCGTGGTCGTGC 237 Query 145999 AATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGA 146058 | || | |||||||| || || || | ||| | || | ||| |||| || || Sbjct 238 AGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATCAGG 297 Query 146059 TACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTG 146118 |||| ||| || | | |||||||| || || ||||| | |||| |||| | ||| Sbjct 298 TACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTG 357 Query 146119 AACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTAC 146178 |||||||||| |||||||||||| ||||| |||||||| |||| || || ||||| | Sbjct 358 AACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGGC 417 Query 146179 GCCACCAGCAAAGAGTTTCTCACGCCGT 146206 || | ||||| ||||| | |||||||| Sbjct 418 GCGAGCAGCAGCGAGTTGCGCACGCCGT 445 >seq170 Length=18893 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||| | || | ||| ||||| || || || ||||| || Sbjct 6687 GCACCACCACGAAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 6628 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | |||||| || || ||||| || || ||| |||||| ||||||||||| ||| Sbjct 6627 GAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGA 6568 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||||||| ||| |||||||||| | || | | |||||| | |||| Sbjct 6567 GGGATTCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCG 6508 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | ||| |||||||||||||| || || || |||||||| Sbjct 6507 ACGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 6458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475414163754240