Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq422 251 9e-62 seq756 199 5e-46 seq3138 93.3 5e-14 >seq422 Length=12968 Score = 251 bits (278), Expect = 9e-62 Identities = 582/862 (68%), Gaps = 25/862 (3%) Strand=Plus/Plus Query 116512 ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATAT 116571 || ||||| | ||||| || || ||||| |||||||| |||||||| ||||| || Sbjct 968 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACACGAGTCCTTGTACAGCATGTAC 1027 Query 116572 GGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTG-GCAC 116630 ||||| |||||||| | || |||| ||| || || ||| | || |||| || | Sbjct 1028 GGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGA-----GCTGCTGCGCGC 1082 Query 116631 AG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTT 116686 | | | ||| || || ||||| |||||||| ||| || ||||| ||||| | Sbjct 1083 GGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGT 1142 Query 116687 CACCC-ACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCA 116745 ||||| || | | | |||| || ||||||| | || ||||| || ||| | || Sbjct 1143 CACCCCACGTCGTGT-AGAGACCCGGTGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCG 1201 Query 116746 CCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA 116805 ||||||| |||||||||||||| || || ||||| | ||| |||| ||||| ||| Sbjct 1202 TTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAACAGATCACGA 1261 Query 116806 CAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 116864 ||| || || | | || || || | || | || || | ||| || || Sbjct 1262 GCGCGGTGCAGCT-CGTTGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGC 1320 Query 116865 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA---CGACCAGCCTGGTTTAC 116921 ||||||||| || || |||| ||||| || |||||||| | ||| |||| | || Sbjct 1321 GTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCAC 1380 Query 116922 ATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATT 116981 ||| | |||||| |||| || ||||| ||||| || | || || | || ||| || Sbjct 1381 ATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTT 1440 Query 116982 TGTCCCCCGAAT--ACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCC 117039 || || || || ||||| ||| | || | || | ||| | | | |||||| || Sbjct 1441 CGTGCCACGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACGCTGACACCAATGCCG 1498 Query 117040 CCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAG 117099 || |||||||| ||||| ||||||| | |||| || | ||||| || ||||||||| Sbjct 1499 CCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAG 1558 Query 117100 TCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTG 117159 ||| |||| | |||| |||||||| ||||| || || | || || || |||||| Sbjct 1559 TCATCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTG 1618 Query 117160 AAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAG 117219 || || || || |||||||| |||| | | ||| ||||| | ||||| ||||| | Sbjct 1619 AACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGC 1678 Query 117220 ACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTG-GGG 117278 | | | ||||| | | ||| || |||| | ||| |||| || ||| | || ||| Sbjct 1679 GCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGG 1738 Query 117279 TGTTTCCATC-AGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGAC 117337 | | || | | | ||| ||| | | ||||||| |||||| | ||||||| | Sbjct 1739 CGCT--CAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGC 1796 Query 117338 CAAAATAGCCAAAGTCATAGTC 117359 |||| ||| | | ||| |||| Sbjct 1797 CAAAGTAGTCGTACTCAAAGTC 1818 >seq756 Length=9614 Score = 199 bits (220), Expect = 5e-46 Identities = 399/583 (68%), Gaps = 20/583 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || || ||||||||||||||||| ||||| || | ||| ||| | ||||| Sbjct 2133 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 2192 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 127349 | || || |||||| || | || |||||| | |||| | | |||||| | Sbjct 2193 CCAGTCGAACGGGTTCGACACCTTGTAGATC-TTGGCAACGCCAAGCGCGTGGAGGAGGC 2251 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||| | | | |||||||||||| |||| ||||||||||||||||| | Sbjct 2252 GATCGGCGCAGAACTCAATGTACTGGCACATGAGAGACGAGTTCATACCGATGAGCTCCA 2311 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 ||||||| |||| || |||| ||||||| || | ||||| || || | ||| ||| Sbjct 2312 CCGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCGACAGCATCGCGAATGATCTCGT 2371 Query 127470 GAATA-GTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG-----CAA 127523 | || | | | || | | ||| || |||| |||| | ||| | | Sbjct 2372 GGATGCGAGACTCGGGGAGCTTGTTGGCG---AG-CTTG--GAGTACAGCAGGCACGCGA 2425 Query 127524 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 127583 | || |||||||||||||||||| |||||||| || |||||||||| || || |||| Sbjct 2426 AGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 2485 Query 127584 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 127643 | || || |||||||| | |||||| || | || || ||||| ||||||||||| |||| Sbjct 2486 TAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 2545 Query 127644 CCACACACGCGAACGCAAATAGACGCTCGGCAAA---GGAGCGGGACTTTGTATCAAACC 127700 | || |||||||| | | ||||||||| || || |||| | | || ||| Sbjct 2546 CGACGGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGC---GAGTCGCACC 2602 Query 127701 ACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA 127760 |||| | |||||| || ||||| |||| | ||| |||| |||| ||| || | | Sbjct 2603 ACTTGAGCGCCCAGTGGGCCTTCTTCTGCACACAAGGGATCGTCTCGATGGCGCGGAGAA 2662 Query 127761 GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 | | ||||| || | | || ||||||||| | || ||||| Sbjct 2663 GGTGGTTCTTCTCGGTCTGGTCCTTGATGTACGTGTCGATGAG 2705 >seq3138 Length=2987 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 176831 GGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTC 176890 ||||| || ||||||| ||| || ||||| |||||||| ||| | ||||| ||| || Sbjct 2719 GGGAAGACGCCGTAGTAATCGCGTCCAACAACAGAGAGGCCACTGATTGCGAAGGTTTTG 2778 Query 176891 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTG 176950 || || || ||||| |||| || ||||| || ||| || | || || || || | | Sbjct 2779 GCTGACTCGCCCTCAGTCAGAATCAGCGTGCAGTTTTGAGCCTTCGCTGTGCCGGCGTAG 2838 Query 176951 TTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 176991 ||||||||||| | ||| || || || || | ||||| || Sbjct 2839 TTCGCATCGTCGAGCTTTGGGATTCCTGTTAACTTGGATTT 2879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613395418988160