Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq756 242 7e-59 seq422 221 2e-52 >seq756 Length=9614 Score = 242 bits (268), Expect = 7e-59 Identities = 563/841 (67%), Gaps = 17/841 (2%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| | |||||| | ||||| Sbjct 2133 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 2192 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| | || || | | | | ||| | | | || ||| | Sbjct 2193 CCAGTCGAACGGGTTCGACACCTTGTAGATCTTGGCAACGCCAAGCGCGTGGAGGAGGCG 2252 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 ||| ||| | |||| ||||| | ||||||| | |||||| || ||||| ||| Sbjct 2253 ATCGGCGCAGAACTCAATGTACTGGCACATGAGAGACGAGTTCATACCGATGAGCTCCAC 2312 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | || ||||||||||| ||| || || || | | |||| | Sbjct 2313 CGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCGACAGCATCGCGAATGATCTCGTG 2372 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 | ||| ||||| | | | |||||| || | |||||| || |||| ||| || ||||| Sbjct 2373 GATGCGAGACTCGGGGAGCTTGTTG-GC--GAGCTTGGAGTACAGCAGGCACGCGAAGTC 2429 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | ||| | || ||||| || ||||||| |||| ||||||| ||| |||||||| | Sbjct 2430 GCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATAAG 2489 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| ||||| ||||||||||||||||| || Sbjct 2490 GCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCGAC 2549 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC---GTTCTTGTCTGAGATCCAGGA 48318 || ||||||||| || | ||| |||| | || | | ||| | ||| Sbjct 2550 GGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCGAGTC---GCACCACTT 2606 Query 48319 AAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTT 48378 |||||||||| |||||||||| | || || |||||||| ||||| |||| || | Sbjct 2607 GAGCGCCCAGTGGGCCTTCTTCTGCACACAAGGGATCGTCTCGATGGCGCGGAGAAGGTG 2666 Query 48379 CTTGCACTC-ACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAG 48434 || ||| ||| |||| | || || |||||||| | ||||| ||| | Sbjct 2667 GTTCTTCTCGGTCTG-GTCCTTGATGTACGTGTCGATGAGCAGC---GAGTACACCTCCG 2722 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | ||||| || || |||||||| ||||||||| | |||||| ||||||| Sbjct 2723 AGTGGATGTTCTCAATCGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCAGGAACCTGCA 2782 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 | || || ||| || | || ||||| ||||| || ||||| || || |||| Sbjct 2783 CCTCGCTGCTGAAGTTCATCGCGAGGTTCTCGTTGACGATGCCATCACTGGCCGCGAAGA 2842 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTA 48614 | || || || || || | || | ||||||||||| ||||| |||||| ||| | Sbjct 2843 ACGCGAGCACGTGCTTGATAAAGTAGCGCTCGTTGTCCGTGAGGTTGTTCCAGTCCTTGA 2902 Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACA 48674 ||| | | ||||| | ||||| | ||||||||| ||| || || ||||||| Sbjct 2903 GGTCGTGCACGAGGTCGATCTCTTCAGCCGTCCAGAAGCTCGCCTCAGCCTTCTTGTACA 2962 Query 48675 T 48675 | Sbjct 2963 T 2963 >seq422 Length=12968 Score = 221 bits (244), Expect = 2e-52 Identities = 689/1049 (66%), Gaps = 37/1049 (4%) Strand=Plus/Plus Query 213372 GGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGG 213431 ||||| ||||| |||||||| ||||||||||||||| ||| | || ||||||| | | Sbjct 776 GGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCG 835 Query 213432 GCCAGGTACTCGTGATTGAACACGTAGCCC---CCGTCCTGCACAAACTCAGGCAGGGCG 213488 ||| | | ||||| || || | |||| | |||||||| | ||| ||| Sbjct 836 TACAGCTTC------TTGAAGTCGAAGGTCTTGTCGTCGTTCACAAACTTGGACAGCGCG 889 Query 213489 ATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGT 213547 ||| || |||||||| || || ||||| | | | | | |||||||| | | |||| Sbjct 890 ATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGAC-GTGTACTCGAGCACCTCGCA 948 Query 213548 GCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-G 213606 ||| |||||||| | ||||| ||||| |||||||| ||||| ||| ||||| | || | Sbjct 949 GCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGAC-TTGCGGTTACACG 1007 Query 213607 AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCC 213666 | |||||||| |||||||| || | || ||||| | ||| ||| | || ||| | || Sbjct 1008 AGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACC 1067 Query 213667 AGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTC-CGGGCGTAGC-CTCGTACTGTTC 213724 |||| | | || || || || | || | ||| | | || ||||||||| | Sbjct 1068 AGAGCTGCTGCGCGCGGA----TCGTCTTGC-GCGCGCGGCCCTCGCGCTCGTACTGGTG 1122 Query 213725 GTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGG-ACAGGATGCGGGAC 213783 ||| ||| | | ||| |||| ||||| | ||| || ||||| | | |||| | Sbjct 1123 GTACAGCGCCTCGAACTCGTCACCCCACGTCGTGTAGAGACCCGGTGCCTCGTTCGGG-C 1181 Query 213784 ACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACA 213843 | | |||||||| || |||| | || | || |||||| || || || | ||||| Sbjct 1182 AGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACA 1241 Query 213844 GCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGAT 213900 |||| |||||| || | | | | ||||| || ||| || || | Sbjct 1242 TCGCGTAGAACAGATCACGAGCGCGGTGCAGCTCGT---TGCCGTGGTTCTTCTTGAGGT 1298 Query 213901 CTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCC 213960 | || || || |||||||| |||||||||||||| | || || || || | |||| | Sbjct 1299 CGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGC 1358 Query 213961 TCTTGCCG---CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTA 214017 ||||||| ||||| ||||| | ||| |||||| | |||||| | ||| | Sbjct 1359 GCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCA 1418 Query 214018 CCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGC 214077 | || ||||| ||| ||||| || || || |||||| || || | | |||| Sbjct 1419 CGAGGCCGTTCGACGAGCCGTTCGTGCCACGGATGTACGAGTTGGTCGCGCGGATGTTGT 1478 Query 214078 TCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCT 214137 || | || || ||||| ||||| |||||||||| |||||| || | | || | Sbjct 1479 GCACGCTGACACCAATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGT 1538 Query 214138 CCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGG 214197 | |||||| | || |||||| | | | |||| |||||| ||| ||||| | Sbjct 1539 CATAGATGCCCTCGATCGAGTCATCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCG 1598 Query 214198 GCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGA 214257 | | | || ||| | |||||| ||||| || | || || | | || | | || | Sbjct 1599 GGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACA 1658 Query 214258 GGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACC 214317 | | ||| ||||| || | | | |||||| ||||||||||| | |||| | Sbjct 1659 TGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGC 1718 Query 214318 TCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTTG---AGCAGGTAGG 214374 || | ||| ||||| || | ||| | | || ||| || | || ||||| | Sbjct 1719 GCAGAATCATCTGCTGCGGGCGCTC--AGCGACC-TTGCCACCGACGCGCAGGAGGTACG 1775 Query 214375 AGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 | ||| || |||||||| ||||||||| Sbjct 1776 ACTTCTCGAGCGTCTTGAAGCCAAAGTAG 1804 Score = 116 bits (128), Expect = 7e-21 Identities = 336/512 (66%), Gaps = 24/512 (5%) Strand=Plus/Plus Query 212697 TTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCT 212756 || || ||||| |||||| ||| | | | | | ||| ||||||||||| | | | Sbjct 91 TTGAGCGACTGGCTCTGGCAGATGTAGGCGCCGCGGTCGGCGGCCATGTCGAGCACGGCC 150 Query 212757 CTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGG 212816 |||| || ||||||||| |||||| | | || || | | | || |||| | | Sbjct 151 TTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTCACGGCATCCGGGATCACACGC 210 Query 212817 ATGTTCTGCACAGACCCCCTGTGTATGGTCAG---CTGCAGGCGCATGTCCTCGT---TC 212870 | ||||||||| || || ||| | ||| ||| ||||| ||||| || Sbjct 211 ACGTTCTGCACTGAGCC---GTGGTCGTGCAGGATCTGGTTGCGCA---CCTCGGGCGTC 264 Query 212871 CAGAGGCCCCTGGTCTCCAGGCACT---TGACCAGGTGAGGGTTGACTATCTGGAAGTCA 212927 |||| ||| | ||| | | || | | ||||| ||| || ||| ||| || Sbjct 265 CAGATGCC---GAGCTCGATGAGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCG 321 Query 212928 CCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTC 212987 |||| ||||| | | | ||| | ||| | ||| | |||||||| ||||||||| Sbjct 322 CCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTG 381 Query 212988 CCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACT 213047 || || ||||| || || || || ||||| || || | ||| || ||| | ||| Sbjct 382 CCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACG 441 Query 213048 CCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCG 213107 |||| || ||| | | | ||| | ||||||||||| ||| ||| ||| || Sbjct 442 CCGTACTGCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCAGAGGCCGGAC--GTCGGCG 499 Query 213108 TCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAA 213167 | ||| ||||||||| |||| |||||||| ||||||||||| ||||| ||| Sbjct 500 TG----ACGCCCCACATGTCGTACTGGAAGATGCCCTTGCTCACGGGTGAGCCCTCGTAG 555 Query 213168 GAGGAGTAGGGGCCATGCTCCTTGGCCAGCTC 213199 || ||| ||||| |||||||| || ||||| Sbjct 556 CTGGCGTACGGGCCGTGCTCCTTCGCGAGCTC 587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931363074723840