Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq177 141 3e-28 seq1178 105 2e-17 seq36 91.5 4e-13 >seq177 Length=18769 Score = 141 bits (156), Expect = 3e-28 Identities = 262/379 (69%), Gaps = 8/379 (2%) Strand=Plus/Plus Query 302490 GTCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTT-ATTTCTTACGG 302548 ||| || || || || || || || |||||||||| | | |||| ||| | |||| Sbjct 8134 GTCCATACCATCTTCACCATACAAAAACTGAATGATCTCGC-CTTGAGCATTGCGGACGG 8192 Query 302549 TCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAAC 302608 | ||| |||| |||| | ||||| |||| | ||||||||| || |||| Sbjct 8193 TACCATCGTAACGTGTCATCACCGACTCCATGGCTTTGACAAGACGACGCTGGATGTAAC 8252 Query 302609 CAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGA 302668 | ||| || || || || || |||||||| | ||| ||||||||||||||||||||| Sbjct 8253 CGGTTTCAGCAGTCTTGACGGCAGTATCAATCAAACCTTCACGACCACCCATAGCATGGA 8312 Query 302669 AGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCT 302728 |||| | ||||| ||| || ||| | | | ||| | |||||||||||||| || Sbjct 8313 AGAAGAACTCTTGCGGGGTCAGTCCCTTCAAATACGAGTTTTCAACGAAACCACGACTCT 8372 Query 302729 CGGG--CGA-ATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 |||| ||| ||| || ||| |||| || || || || | |||| || | Sbjct 8373 CGGGACCGAGATCATC---CTTTCCGTAGTGAGGAAGAGTTCTTCGGTTGAAGCCATAAG 8429 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTA 302845 | ||||||||||| || ||||||||||| |||| |||| ||| ||||| || || || | Sbjct 8430 GAATACGCTTTCCTTCGACGTTCTGCTGACCCACACACGCAATAATCTGGGAGATGTTAA 8489 Query 302846 AATCACTGCCCTTGGAGCC 302864 | | |||||||| || Sbjct 8490 TGTAAGATCCCTTGGAACC 8508 >seq1178 Length=7138 Score = 105 bits (116), Expect = 2e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || |||| ||| ||||||||||| || || | ||| |||||||| || || || Sbjct 4672 CCGTGCGAGATCAGACAGTCACGCTCCATCTCTCCCATACGCAGACCACCTTCTCGCGCA 4613 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || || ||| ||||| || | Sbjct 4612 CGACCCTCCATGGGCTGGCGCGTCAGCATCGTCACGGGGCCGCGCGAGCGCGAGTGGATC 4553 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || || | |||||||||||||||||||||||||| | |||||||||||||| Sbjct 4552 TTGTCGTCGACCATATGCTTGAGACGCTGGTAGAACGTCGGACCGATGAAGAT 4500 >seq36 Length=34223 Score = 91.5 bits (100), Expect = 4e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | ||||| |||||||||||||| || |||||| | || || || || || Sbjct 10824 CTTGATGGCCGAAGCGAGGGCACCAAGCGAGTCGCGATCGAGGTAGTTCGTCGGCTCATC 10765 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 | || ||| | |||||| | | |||||| || || || || || ||||| |||||||| Sbjct 10764 CATGACAAGGATGTGCGGGTTGAGCCACATGGCAGCGGCAAGGACGACCTTGACCTTCTG 10705 Query 354123 TCCGCCTGATAGTGCGTGAATCTTGGAATATGTACCGAACTGCGATTCAAGGTTGAAATG 354182 || || || || | | || || | |||||||||| | |||| ||| | Sbjct 10704 ACCACCCGAGAGACCACGCATGCGCGAGTGCGTACCGAACTCGGCACCAAGACCGAAGTT 10645 Query 354183 GTCGAGATGTTTCTGTAC 354200 |||||| || ||||| || Sbjct 10644 GTCGAGGTGCTTCTGGAC 10627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471542730704112