Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq422 239 6e-58 seq756 129 7e-25 >seq422 Length=12968 Score = 239 bits (264), Expect = 6e-58 Identities = 579/861 (67%), Gaps = 17/861 (2%) Strand=Plus/Plus Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 ||||| || | |||| ||||| ||| ||| |||| |||||||| |||||||| Sbjct 968 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACACGAGTCCTTGTACAGCATGTAC 1027 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCG-GCTGGTA 111434 ||||| |||||||| |||| || | ||| || || ||| | | | ||| || | | Sbjct 1028 GGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATC 1087 Query 111435 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 111494 | ||| || || ||||| |||||||| ||| || || || ||||| |||| Sbjct 1088 GTCTTGCGC--GCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCAC 1145 Query 111495 CCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCT 111553 || || ||| | ||||||| ||||||| || || ||||| || ||| | || Sbjct 1146 CCCACGTCGT-GTAGAGACCCGGTGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTG 1204 Query 111554 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CA 111612 ||||||| ||||||||||| || || |||||||||| | | || ||||| | | | Sbjct 1205 GCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAACAGATCACGAGCG 1264 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGCGT 111671 | | || || ||| || ||||| || | | || |||||||| | ||| || |||| Sbjct 1265 CGGTGCAGCT-CGTTGCCGTGGTTCT-TCTTGAGGTCGAGGAACTCGAAGATGTCGGCGT 1322 Query 111672 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACAT 111728 |||| ||||| ||||| | |||| || ||||| || ||| || | |||| |||| Sbjct 1323 GCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACAT 1382 Query 111729 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 111788 | ||||| ||| |||| || ||||| ||||| || | | || | || || || | Sbjct 1383 AACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCG 1442 Query 111789 TCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 111846 | || || || ||||| || | || | | | || | | | ||||| || || Sbjct 1443 TGCCACGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACGCTGACACCAATGCCGCC 1500 Query 111847 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 111906 |||||||| ||||| || |||| | | || || ||||||| || | ||| ||||| Sbjct 1501 GGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTC 1560 Query 111907 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 111966 ||||| |||||| |||||||| |||| |||||| | || || || || ||||| Sbjct 1561 ATCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAA 1620 Query 111967 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 112026 || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | | Sbjct 1621 CAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGC 1680 Query 112027 AGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGT 112086 | || ||||| | | ||||||||||| ||||| |||| | ||| | ||| ||| Sbjct 1681 GGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCG 1740 Query 112087 TTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAA 112146 || || ||||| ||| || | || || |||||| || || |||| ||||| Sbjct 1741 CTCAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAA 1800 Query 112147 GTAACCAAAATCATAGTCCCG 112167 ||| | | ||| |||| || Sbjct 1801 GTAGTCGTACTCAAAGTCGCG 1821 >seq756 Length=9614 Score = 129 bits (142), Expect = 7e-25 Identities = 353/530 (67%), Gaps = 18/530 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 2134 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 2193 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACG 122489 |||| || || ||| | | || | || ||||| | |||| | |||||| || Sbjct 2194 CAGTCGAACGGGTTCGACACCTTGTAGATCT-TGGCAACGCCAAGCGCGTGGAGGAGGCG 2252 Query 122490 ATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 ||| | || | |||||||||||| | |||| ||||||||||||||||| | Sbjct 2253 ATCGGCGCAGA-ACTCAATGTACTGGCACATGAGAGACGAGTTCATACCGATGAGCTCCA 2311 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| | |||| || |||| | ||||| ||| | || || || | ||| ||| Sbjct 2312 CCGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCGACAGCATCGCGAATGATCTCGT 2371 Query 122609 GGAT---AGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAA 122662 |||| || |||| || || | || | |||| || | || | || | Sbjct 2372 GGATGCGAGACTCGG----GGAGCTTGTTGGCGAG--CTTGGAGTACAGCAGGCACGCGA 2425 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || |||||||||||| || || || || || || || ||||||| || || |||| Sbjct 2426 AGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 2485 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 | || || |||||||| | ||| | |||| |||||| || || ||||||||||| |||| Sbjct 2486 TAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 2545 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAA-GGAGCGAGACTTTGCATCAAACCAT 122841 | || || ||||| | | || |||||||| | ||| | | | || |||| Sbjct 2546 CGACGGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGC-GCGAGTCGCACCAC 2604 Query 122842 TTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 || | ||||| | |||||||||| | ||| || | || | |||||| Sbjct 2605 TTGAGCGCCCAGTGGGCCTTCTTCTGCACACAAGGGATCGTCTCGATGGC 2654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627917572569600