Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4531 196 1e-44 seq638 141 3e-28 seq9522 86.0 2e-11 >seq4531 Length=1828 Score = 196 bits (216), Expect = 1e-44 Identities = 847/1330 (64%), Gaps = 16/1330 (1%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | || || || || || ||||| | ||| ||||| || || || || || Sbjct 69 GGCATTGATCTCGGCACGACGTACTCGTGTGTCGGTGTGTGGCAGAACGACCGAGTGGAG 128 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || || || || ||| | || ||||| || ||||| || || || || || Sbjct 129 ATCATCGCGAACGACCAGGGCAACCGCACGACGCCGTCGTACGTGGCGTTCACGGACACG 188 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| |||| || || |||| || || || | || || | | |||||||| Sbjct 189 GAGCGTCTGATCGGCGACGCTGCGAAGAACCAGGTCGCGATGAACGCCAGCAATACGGTC 248 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 || ||||| ||||| || || || | | || || ||| | || || || | Sbjct 249 TTCGATGCCAAGCGCCTGATCGGACGCAAGTTCTCGGACGCAGTCGTGCAGTCGGACATG 308 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAA 349504 || || | || || | || || | || ||||| || || | || || Sbjct 309 AAGCACTGGCCGTTCAAGGTGGTCGCCGGGTCGGGAGATAAGCCGCAGATCGTCGTCGAG 368 Query 349505 TATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAA 349564 | || || || | || || ||||| || || || || ||||| | || Sbjct 369 TTCAAGGGGGAGCGCAAGACGTTCCAGCCCGAGGAGATCTCGTCCATGGTGCTGACCAAG 428 Query 349565 ATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTA 349624 |||||||| || || || || || | || || || | | || || || || || Sbjct 429 ATGAAGGAGATCGCCGAGGCGTACCTGGGCACGACGGTGAAGAACGCGGTGATCACGGTG 488 Query 349625 CCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGG 349684 || || || ||||| || |||||||| ||||| ||| || |||| || || || Sbjct 489 CCGGCGTACTTTAACGACTCCCAGCGTCAGGCAACGCGAGACGCCGGCACGATCGCTGGT 548 Query 349685 TTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGAT 349744 | || || || | || || || || || || |||||||| || || || || || || Sbjct 549 CTCAACGTGCTGCGCATCATCAACGAGCCAACGGCTGCAGCGATCGCGTACGGACTGGAC 608 Query 349745 AAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGAT 349804 || | | | | | || ||| | || || || ||| | || ||||| || ||||| Sbjct 609 AAGAAGGGCGGC---GAGCGCAATGTGCTGATCTTCGATCTCGGCGGTGGCACGTTTGAC 665 Query 349805 GTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACA 349864 || || | || | | |||||||| || || || || || || ||||| ||||| || Sbjct 666 GTGTCGTTGCTGTCGATCGAAGAGGGCATCTTCGAGGTGAAGGCGACTGCGGGTGACACG 725 Query 349865 CATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAG 349924 || || || || ||||| ||||| ||||||||||| | || || || || ||| Sbjct 726 CACCTCGGCGGCGAAGACTTTGACAATCGTCTCGTGGACTACTTCGTGGCCGAGTTCAAG 785 Query 349925 CGTCAAGC-TAAAATTGATATTGGAGAT--AATCCTAGAGCAATGCGTCGCCTAAGAACT 349981 || ||||| | ||| | || | || | | | |||| ||||| | || Sbjct 786 CG-CAAGCACCGCAAGGATCT--GACGTCGAACCAGCGCTCGCTGCGACGCCTTCGCACG 842 Query 349982 GCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGAT 350041 || || || ||||| ||||| | || || || | || ||| | || || ||||| Sbjct 843 GCATGCGAGCGTGCCAAGCGGACGTTGTCGTCGTCGACGCAAGCGCACATCGAGATTGAC 902 Query 350042 TCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTA 350101 || || ||| ||| || ||| | || || ||||| || || || || | Sbjct 903 TCGCTGTTTGACGGCGTCGACTTCAACAGCACGATCACGCGTGCGCGCTTCGAGGACATG 962 Query 350102 TGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAA 350159 ||| || || ||| ||| || ||||| || ||||| |||||||| || || | Sbjct 963 TGTGCCGA-CTATTT-CCGCAAGACGATGGAGCCCGTGGAGAAAGTATTGGTGGACGCCA 1020 Query 350160 AAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAA 350219 | || ||||| | ||| | | || || || || || ||||| || || ||||| |||| Sbjct 1021 AGATCTCCAAGAGCCAGGTGCACGAGGTGGTCTTGGTGGGTGGCTCGACGCGTATCCCAA 1080 Query 350220 AAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATC 350279 | || || ||||| || || || ||||| || || || || || | | || || |||| Sbjct 1081 AGGTGCAGCAGTTGCTGTCGGACTTTTTCAACGGTAAGGAGCCGTGCAAGTCGATCAATC 1140 Query 350280 CAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC---TGGAAATA 350336 | || || || || || | ||||| || || |||||| | ||||| | || | | Sbjct 1141 CGGACGAGGCCGTGGCGTTCGGTGCCGCCGTGCAGGCAGCCATTTTGACGGGTGAGGACA 1200 Query 350337 AGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAG 350396 || || || | | ||||| || || || ||||| || || || ||||| || | | Sbjct 1201 AGTCGTCCAAGCTGCAGGATCTGTTGCTGCTGGATGTGACGCCGCTGTCGCTGGGCCTCG 1260 Query 350397 AAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAA 350456 | || | || | || ||||| || || || | || | | | || || || || | Sbjct 1261 AGACCGCGGGCGGTGTCATGACGACGCTGATCCCGCGCAACACTGCAGTGCCGACGAAGA 1320 Query 350457 AGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTG 350516 |||| || || || || || | ||| || || ||||| | || || ||||| |||| Sbjct 1321 AGTCGCAGACGTTCTCGACGTATGCGGACAACCAGCCTGGCGTCTTGATCCAAGTGTTTG 1380 Query 350517 AAGGTGAACG 350526 | || || || Sbjct 1381 AGGGCGAGCG 1390 >seq638 Length=10627 Score = 141 bits (156), Expect = 3e-28 Identities = 453/697 (65%), Gaps = 7/697 (1%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || |||||| | ||||| || || || || || | || ||||| || || || || || Sbjct 1351 GGTATCGATCTCGGTACGACCTACTCGTGCGTCGGCGTGTGGCAGAACGACCGCGTCGAG 1410 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || || || |||||| | || ||||| || ||||| || || || || || Sbjct 1411 ATCATCGCCAACGACCAGGGTAACCGCACGACGCCGTCGTACGTCGCCTTCACGGACACG 1470 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| | || |||||| | || || || || | || || | | || ||||| Sbjct 1471 GAGCGTCTCATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACGCCACCAACACGGTG 1530 Query 349385 TTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATCTGATCT 349443 || || || ||||| || ||||| | ||||| | ||| || || || || | Sbjct 1531 TTCGACGCCAAGCGTCTCATTGGCCGCAAGTTCAGC-GACCCGACTGTCCAGTCGGACAT 1589 Query 349444 AAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGA 349503 || || | ||||| || || ||| | ||||| || || || ||| | Sbjct 1590 CAAGCACTGGCCTTTCACGGTGTCGCCAGGCGCTGGTGACAAGCCGCAGATCACGGTCCA 1649 Query 349504 ATATAAAGGTGAA-CAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 | || || || | || || || || || || || || || ||||| | | | Sbjct 1650 GTTCAAGGGCGAGTCGAAGACC-TTCCAGCCGGAGGAGATCTCGTCGATGGTCCTCATCA 1708 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||| || ||||||| || | | || | || | | || || ||||| | Sbjct 1709 AGATGCGTGAGGTTGCTGAGGCCTTCATCGGCAAGGAGGTCAAGAACGCCGTCATTACGG 1768 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || ||||| ||||| || | |||||| || || || |||||||| |||||| | Sbjct 1769 TCCCGGCCTACTTTAACGACTCGCAGCGTCAGGCCACGAAGGATGCTGGTGCCATTGCCG 1828 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || || || | || || || || || || ||||| || || || || || |||| Sbjct 1829 GCCTCAACGTGCTCCGTATCATCAACGAGCCGACGGCTGCCGCTATCGCTTACGGTCTTG 1888 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | | | || || | || || || ||| | ||||| ||||| || | Sbjct 1889 ACAAGAAGGGCGGT---GAGCGCAACGTGCTCATCTTCGATCTTGGTGGCGGTACCTTCG 1945 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || | |||| ||||| || || || || || || || |||||||| | Sbjct 1946 ATGTGTCGCTCCTGAGCATTGAGGAGGGTATCTTCGAGGTCAAGGCTACGGCTGGTGACA 2005 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 | ||||||||||| || ||||| ||||| || ||||| Sbjct 2006 CGCATCTTGGTGGTGAGGATTTCGATAACCGCCTCGT 2042 >seq9522 Length=556 Score = 86.0 bits (94), Expect = 2e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | |||||||||||||||||||||||||| |||| | Sbjct 396 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTGGACCGC 455 Query 74548 TCGGGCA 74554 ||||||| Sbjct 456 TCGGGCA 462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514971418664528