Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq422 352 3e-92 seq756 158 1e-33 seq2220 134 2e-26 seq3138 93.3 5e-14 seq112 84.2 2e-11 >seq422 Length=12968 Score = 352 bits (390), Expect = 3e-92 Identities = 524/729 (72%), Gaps = 18/729 (2%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| | ||| |||| | ||| |||||||| ||||| || ||||||||| Sbjct 1674 GAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGACGCTGTTCAAC 1615 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || ||| | ||| ||| ||||| ||||||||| | || ||||||||||||||| Sbjct 1614 GCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCGCCATGAAGGATGACTCG 1555 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 ||||| |||||||| || ||||||||| |||| ||| ||||||||||||| | || || Sbjct 1554 ATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCCGGCGGC 1495 Query 53423 ATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 || ||| || | ||| | ||| |||| |||| | | | ||| || |||||||| Sbjct 1494 ATTGGTGTCAGCGTGCAC-AACATCCGCGCGACCAACTCGTACATCCGTGGCACGAACGG 1436 Query 53482 CGTCGCCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | ||| ||| || ||||||| ||||| ||||| |||||| ||||||| || || || Sbjct 1435 C-TCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCAACGACACGGCGCGTTATGTGG 1377 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 | |||||||| || ||||||||||| |||||||| || || ||||||||||||||||||| Sbjct 1376 ATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTATCTCGAGCCGTGGCACGCCG 1317 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC---C 53657 |||| | ||||| ||||| || ||| || || |||| | ||| | || | Sbjct 1316 ACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCAACGA---GCTGCACCGCGCTC 1260 Query 53658 GTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716 |||| ||||| ||| || |||||||||| || ||||||||| | || ||| || Sbjct 1259 GTGATCTGTTCTAC-GCGATGTGGATTCCCGATCTCTTCATGAAGCGCGTTGAGGCCAAC 1201 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC--CAGGGTGTCTACGGTG 53774 | |||||| |||| | |||||||||||| || || ||| || | || |||| Sbjct 1200 GGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCACCGGGTCTCTACACGACGTGG--GGTG 1143 Query 53775 AGGAGTTTAACGAGATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTC 53833 | ||||| | | | |||| | ||||| || | |||||||| |||| | || Sbjct 1142 ACGAGTTCGAGGCGCTGTACCACCAGTACG-AGCGCGAGGGCCGCGCGCGCAAGACGATC 1084 Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893 |||| || | ||| || |||||| || ||| | |||||||| ||||||||| Sbjct 1083 CGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCGAGACGGGCACGCCGTAC 1024 Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAA 53953 ||| |||||||| ||| ||| ||| |||||| ||||| ||||| ||| Sbjct 1023 ATGCTGTACAAGGACTCGTGTAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATCCGC 964 Query 53954 TCGAGCAAC 53962 ||||||||| Sbjct 963 TCGAGCAAC 955 Score = 174 bits (192), Expect = 2e-38 Identities = 313/450 (70%), Gaps = 17/450 (4%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| ||||| | ||||| ||||| || |||||||| || |||||| | Sbjct 443 GGCGTGCGCAACTCGCTGCTGCTCGCGCCGATGCCGACGGCGTCGACCGCGCAGATCCTC 384 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||||||| || ||||||||| |||||||||||| ||| ||||| || ||| Sbjct 383 GGCAACAACGAGTCGATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTTGCA 324 Query 55598 GGTGAGTTTGTCATGATC---AACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAG 55654 || |||| ||| |||| |||||| |||| | ||||| || || || || Sbjct 323 GGCGAGT---TCACGATCGTGAACAAGTACCTGATGAAGGAGCTCATCGAGCTCGGCATC 267 Query 55655 TGGAACCCGCAGAT---CAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG 55711 |||| || || | ||| | ||| || || || || || || ||||| || Sbjct 266 TGGACGCCCGAGGTGCGCAA-CCAGATCCTGCACG--ACCACGGCTCAGTGCAGAACGTG 210 Query 55712 ---GAGATTCC-TCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAA 55767 | ||| || ||| | ||||||| ||| ||||||||||||||| ||||| Sbjct 209 CGTGTGATCCCGGATGC-CGTGAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAA 151 Query 55768 GAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAA 55827 | || | |||||| || || || || || |||||| |||| |||||| || || Sbjct 150 GGCCGTGCTCGACATGGCCGCCGACCGCGGCGCCTACATCTGCCAGAGCCAGTCGCTCAA 91 Query 55828 CATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAA 55887 | ||| | | | || | | |||| ||| || |||||||| |||| |||||| Sbjct 90 TGTGCACATCGCGGAGCCGACGATCAGCAAGCTGACGTCCATGCACTTCTACGCGTGGAA 31 Query 55888 GAAGGGACTCAAGACGGGTATGTACTATCT 55917 |||||| |||||||||||||||||||| || Sbjct 30 GAAGGGTCTCAAGACGGGTATGTACTACCT 1 >seq756 Length=9614 Score = 158 bits (174), Expect = 1e-33 Identities = 333/489 (68%), Gaps = 7/489 (1%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 |||||||||||||| || |||||||| | ||| ||||| | ||||| || || |||| Sbjct 2476 AGGCCAGGCATAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAG 2535 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA--CGGTGCATCGGAAG 74922 |||||||| ||||| || || ||||| | || | ||||| ||| || || || Sbjct 2536 AAGATGCCCTCGACGGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCGAG 2595 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTG-ACCGCAGGGACAGTATCGATCGC 74980 || ||| | | ||||| | || ||| | || || ||||| || ||||| || Sbjct 2596 TCGCACCACTTGAGCGCCCAGTGGGC-CTTCTTCTGCACACAAGGGATCGTCTCGATGGC 2654 Query 74981 TTGGAAGAGGCTTGCCTTCTC-TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGT 75039 ||| ||| |||||| || || ||||||| | | |||| || | || |||| Sbjct 2655 GCGGAGAAGGTGGTTCTTCTCGGTCTGG-TCCTTGATGTACGTGTCGATGAGCAGCGAGT 2713 Query 75040 ACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTG 75099 || |||||| || || ||| | |||| | ||||||| | |||||||| | Sbjct 2714 ACACCTCCGAGTGGATGTTCTCAATCGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCAG 2773 Query 75100 CAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGG 75159 || ||| || || | || ||||| ||| ||||| |||||||||| || || Sbjct 2774 GAACCTGCACCTCGCTGCTGAAGTTCATCGCGAGGTTCTCGTTGACGATGCCATCACTGG 2833 Query 75160 CGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCC 75219 | ||||| || || || || |||||||||| |||||| | ||| ||||| |||| || Sbjct 2834 CCGCGAAGAACGCGAGCACGTGCTTGATAAAGTAGCGCTCGTTGTCCGTGAGGTTGTTCC 2893 Query 75220 AATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCT 75279 | ||||| ||||| | | | || ||||| || |||||||||| ||| | |||| Sbjct 2894 AGTCCTTGAGGTCGTGCACGAGGTCGATCTCTTCAGCCGTCCAGAAGCTCGCCTCAGCCT 2953 Query 75280 TTTTGTACA 75288 | ||||||| Sbjct 2954 TCTTGTACA 2962 >seq2220 Length=4288 Score = 134 bits (148), Expect = 2e-26 Identities = 210/298 (70%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 ||||||||| || || | || || || |||||||| || ||| ||||| |||||||| Sbjct 1606 CGTGAAGATATAGCGTGGACTCGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTG 1665 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||| || || | || | |||||||| || || || | | ||| |||| || || Sbjct 1666 TCCCGACGGATACAGCAATGGCAGGTTGTTAGCACCGACATAGTCCTGCGCCATGTTGAC 1725 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGA-TGTATC 152206 |||||| ||||| ||| || |||||||| ||||| || |||| ||| | ||| | Sbjct 1726 AATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCT-CGCTACAGTAAC 1784 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 | || | |||||| ||||| | ||| ||||||| || ||| ||||| ||| | | || Sbjct 1785 CAGCGAGCTGCGCGACCTTGACCTCCTTCGTCAGCTTGCGCTTCAGACACGCGAACAGCA 1844 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 |||||||||| || || | ||||| |||||| || | ||| ||| | |||| Sbjct 1845 CCTTGCGCTGCGAGACCTTGAGCCCGTCGACCACGGACGGTAGCGACCGCGCGTTGTC 1902 Score = 104 bits (114), Expect = 3e-17 Identities = 174/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || || || | || || || |||||||| || || ||||| || || ||| Sbjct 1607 GTGAAGATATAGCGTGGACTCGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGT 1666 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||| | || | ||||||||| || || ||| ||| || |||| ||||||| Sbjct 1667 CCCGACGGATACAGCAATGGCAGGTTGTTAGCACCGACATAGTCCTGCGCCATGTTGACA 1726 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC-GTAGCC 117483 ||||| || || |||||| || ||||| ||||| || |||| ||| || ||| || Sbjct 1727 ATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCT-CGCTACAGTAACC 1785 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCAC 117543 || ||||| || ||||| | || |||||| || ||| || || || | | ||| Sbjct 1786 AGCGAGCTGCGCGACCTTGACCTCCTTCGTCAGCTTGCGCTTCAGACACGCGAACAGCAC 1845 Query 117544 CTTGCGCTG 117552 ||||||||| Sbjct 1846 CTTGCGCTG 1854 >seq3138 Length=2987 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCG-GGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 ||| |||||||| || || | || | ||||| || ||||| || || || || ||||||| Sbjct 1671 CGTAAAGATGTAACGAGGCGATG-CTGCATCTTTACCACCCGCTAGTCGAGTACCAAACT 1729 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || || | || | || ||||||| ||||| |||| || |||| || | Sbjct 1730 GACCGTTTGGAGACAACAGATGGATGTTGTTGCTTCCCACAAAATCTTGGGCCATGTTGA 1789 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 ||||||||| | |||||| |||||||||||| ||||| | ||||| | | ||||| Sbjct 1790 TAATCGTGCCGTTGAGACTCTGTTCACCGTGGTGGTACGCAGAATGCTCGGACACGTATC 1849 Query 152207 CCGCCAACTGCGCCACCTTCATGTC 152231 | | | ||| || ||||| || || Sbjct 1850 CACCAAGCTGAGCAACCTTAATTTC 1874 >seq112 Length=22202 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 ||| | ||||| ||||||||| | ||||| ||| ||||| | | || || || || Sbjct 7095 CGCGAGCTCGACAAACTCACGCACACTGTGGCACTCGCCCGTCGCGACGACAAAGTCCTC 7036 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 ||| || ||||||||||| ||||||| | ||||||||| || || ||||| Sbjct 7035 GGGGGTCTCGTGCTGCAACATCTTCCACATGCACTCGACGTAGTCGCGCGCATGGCCCCA 6976 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGA 124626 ||||||||| || ||||| || |||| Sbjct 6975 GTCGCGCTTCGCCTCCAGATTACCGA 6950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547116297244800