Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2220 163 3e-35 seq170 149 7e-31 seq422 116 4e-21 seq756 100 3e-16 seq3138 86.0 7e-12 >seq2220 Length=4288 Score = 163 bits (180), Expect = 3e-35 Identities = 202/274 (74%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 31977 CGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAA 32036 ||||| ||||| |||||| || |||||||||||| | | ||| || || ||| || Sbjct 1879 CGTGGTCGACGGGCTCAAGGTCTCGCAGCGCAAGGTGCTGTTCGCGTGTCTGAAGCGCAA 1820 Query 32037 CCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTAC-GTGGCAGAGCAAACGGCCT 32095 ||| ||| || | ||||| |||||||| | || ||| || || ||||| || || | Sbjct 1819 GCTGACGAAGGAGGTCAAGGTCGCGCAGCTCGCTGGTTACTGTAGC-GAGCACACTGCGT 1761 Query 32096 ATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCG 32155 | |||||||||||||||||||| || || ||||||||| | || ||| ||| ||||| Sbjct 1760 ACCACCACGGCGAGGCGTCGCTGCACTCGACGATTGTCAACATGGCGCAGGACTATGTCG 1701 Query 32156 GTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTG 32215 |||| || |||||| || || | || || ||||||||||| || || || || | Sbjct 1700 GTGCTAACAACCTGCCATTGCTGTATCCGTCGGGACAGTTTGGCACGCGCCTGCAGGGCG 1641 Query 32216 GCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 ||||||| || ||||| | || || |||||||| Sbjct 1640 GCAAGGACGCCGCGAGTCCACGCTATATCTTCAC 1607 >seq170 Length=18893 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || || || ||| | Sbjct 6458 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCCTTCG 6517 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||||||| ||| | ||| || || ||||||||||||||||| ||||| || ||| Sbjct 6518 GACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGATCAG 6577 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| |||||||| | || || || | ||||| || Sbjct 6578 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 6637 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | || ||||| ||||| Sbjct 6638 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTTCGTGGTGG 6684 >seq422 Length=12968 Score = 116 bits (128), Expect = 4e-21 Identities = 300/454 (66%), Gaps = 15/454 (3%) Strand=Plus/Plus Query 80044 AGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGC 80103 || |||||||| ||||||||||| ||||||||||| |||| | |||||| || | ||| Sbjct 1 AGGTAGTACATACCCGTCTTGAGACCCTTCTTCCACGCGTAGAAGTGCATGGACGTCAGC 60 Query 80104 TTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCC 80163 || | || || | | | ||| | || || ||||| ||| |||||| | || Sbjct 61 TTGCTGATCGTCGGCTCCGCGATGTGCACATTGAGCGACTGGCTCTGGCAGATGTAGGCG 120 Query 80164 CCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATAC-----TGTAC 80218 || || || || ||||| || | | | ||| || || ||||| || ||||| Sbjct 121 CCGCGGTCGGCGGCCATGTCGAGCACGGCCTTCTGCTTGATCTCCCACACCGTCTTGTAC 180 Query 80219 GATACACCTT-ACGAAGCTCCTCTGGAATGTC---CAGATTTTGCACACTGCCACCGTCC 80274 | | |||| ||| | || || || | || || ||||| ||| ||| Sbjct 181 --TTCTCCTTCACGG----CATCCGGGATCACACGCACGTTCTGCACTGAGCCGTGGTCG 234 Query 80275 TTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACA 80334 | | || || || || || | |||||||| || |||| | || || |||| Sbjct 235 TGCAGGATCTGGTTGCGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATC 294 Query 80335 AGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTA 80394 |||| |||||| | || ||||| || || || ||| || |||| ||| || Sbjct 295 AGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTC 354 Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||| | ||||| | | ||||||||| ||||||||||| || || ||||||||||||| Sbjct 355 GTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATC 414 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCT 80488 || ||| || ||| || || |||| ||||| || Sbjct 415 GGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACT 448 >seq756 Length=9614 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 ||||| ||| || || || || || || || ||||| || || || ||||| |||| Sbjct 2572 AGCGTATCGTCGCGTTCGCTGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCTA 2513 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 | |||||||| || ||||| ||||| ||||| || || || ||||||||||| |||| Sbjct 2512 TCTTCTGGCTCAAGAAGCGCGGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCT 2453 Query 64835 CTCGGGACGAGGGGCTCCAC 64854 | || |||||||| |||||| Sbjct 2452 CGCGTGACGAGGGTCTCCAC 2433 >seq3138 Length=2987 Score = 86.0 bits (94), Expect = 7e-12 Identities = 244/365 (67%), Gaps = 10/365 (3%) Strand=Plus/Minus Query 31182 CAAAAAGTCTCGAATTA-CGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGTACCC 31240 |||||| || | | ||| | ||||| || ||||||||||| || |||| ||||| || Sbjct 2883 CAAAAAATC-CAAGTTAACAGGAATCCCAAAGCTCGACGATGCGAACTACGCCGGCACAG 2825 Query 31241 ACAAGTCGCACGAGTGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTA 31300 ||| | || | |||||||| ||| | || ||||| || || || || | | || | Sbjct 2824 CGAAGGCTCAAAACTGCACGCTGATTCTGACTGAGGGCGAGTCAGCCAAAACCTTCGCAA 2765 Query 31301 TTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGC 31360 | |||| | |||||| || ||| || | ||| || || ||| | ||||||| Sbjct 2764 TCAGTGGCCTCTCTGTTGTTGGACGCGATTACTACGGCGTCTTCCCGTTGAAGGGCAAGC 2705 Query 31361 CGCGTAACGTTCGTGACGCCTCCGTTAAA--CAGGTTACGGATAATGAAGAGTTTTCCAA 31418 || |||||||| || || || | | || | | | | || |||||| || | Sbjct 2704 TGCTCAACGTTCGAGAAGC--GAGTCACACTCAAATCATGAAGAACGAAGAGATTCAGAG 2647 Query 31419 CCTGAAAAAGATCCTCGGGCTTCAGCATGG-CA-AGGTATATAATTCACTGAGAGAATTG 31476 | || || ||| | ||||| |||| || || | |||| ||| || |||| || Sbjct 2646 CTTGGTCAAAATCTTGGGGCTCAAGCACGGTCACAAGTAT-GAATCAACGAAGAGTCTT- 2589 Query 31477 CGGTACGGTCGCCTCATGATTATGACCGACGCAGATCTCGACGGCAGTCACATCAAGGGT 31536 || ||||| | | ||||| ||| | || |||| ||||||||||||||||||||| Sbjct 2588 CGTTACGGGCATTTGATGATCATGGCAGATCAGGATCATGACGGCAGTCACATCAAGGGT 2529 Query 31537 CTTGT 31541 || || Sbjct 2528 CTGGT 2524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570206489445120