Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq875 176 4e-39 seq2106 84.2 2e-11 >seq875 Length=8764 Score = 176 bits (194), Expect = 4e-39 Identities = 445/672 (66%), Gaps = 5/672 (1%) Strand=Plus/Plus Query 29737 CATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTT 29796 |||| |||| | || | | |||||| | |||||| ||||| ||| ||||| Sbjct 6456 CATCGCCATCTTGATCGTGCCATGAGGCTTGTAACCTTCCAGCTCGAAGTCCTCGAAGAC 6515 Query 29797 AAAGTCGTCCAGGCTCTCCACCCTC-CTG--TTTATCCTCAGTGT-GGGAAAGGGTCTGG 29852 ||| || || | ||| | | || ||| || ||| |||| || ||||||| || Sbjct 6516 AAACTCATCGATGCTGTTGGTCTTCTCTGGGTTGATCTTCAGCGTCGGGAAAGCCCGCGG 6575 Query 29853 GCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTC 29912 | | | | |||||||| ||| ||||||||||| | | || ||||| ||| || || | Sbjct 6576 GGTGCGGC-CGAGCTGAACCTTAAGCGGTTCCACATGGTTCAAGTAGATGTGCGCATCGC 6634 Query 29913 CCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGA 29972 | | |||||| || ||||| | ||||| ||||| || || || | || | Sbjct 6635 CGATCGTGTGGATGAAGTCTCCAGCACGCAGCCCTGTGACCTGCGCGATGAGTCGAGTCA 6694 Query 29973 GGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGT 30032 || | ||||| || |||||||| || || ||||| |||||||| | || | ||||| Sbjct 6695 ACAGCGCATAGCTCGCAATGTTAAAAGGCACGCCGAGTCCCATGTCAGCTGAGCGCTGGT 6754 Query 30033 AGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAG 30092 | | ||| ||||||||||| |||| | ||||| ||||| || | ||| ||||| | Sbjct 6755 ACATCTGGCACGAGAGCTCGCCGTTGGCGACGTAGAACTGGCAGAACATGTGACACGGCG 6814 Query 30093 GAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTT 30152 | || ||||| | ||| |||||||| || ||| ||||||||| | || | Sbjct 6815 GCAGCGCCATCTCCTTGAGGTCCGCAGGGTTCCATGCCGACATGATGATGCGACGATCGT 6874 Query 30153 CTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 30212 |||||| || ||| || | | | | ||||| || || ||| ||||||| Sbjct 6875 TTGGGTTCGTCTTGAGCTTGTGAATGACCTCCGCTAGCTGGTCGACTCCCTGGCCCGAGT 6934 Query 30213 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCG 30272 |||| || |||| |||||||| || || || || | ||||||||| || ||||| | Sbjct 6935 AGTCGGCGTGCATGGTCGTGTACTTGGCACCAAAGTGGCGCCACTGGAAGCCATACACTG 6994 Query 30273 GTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAAC 30332 |||| || || || |||| | || ||| || | | |||| | || |||| | Sbjct 6995 GTCCGAGATCGCCAGCTTCACGATGTCCGAGACCGATGCTTTCCAGGTATTCCTTGGATC 7054 Query 30333 CGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTC 30392 | ||| | ||||| || | | ||||| || | | |||| ||||||| || | Sbjct 7055 CATTGCCATCCCAAATGTGGATGCCCTTGTCCTGCAACGTCTTGGCGTTTGTGTCGCCAC 7114 Query 30393 TGACGAACCACA 30404 ||| |||||||| Sbjct 7115 TGATGAACCACA 7126 >seq2106 Length=4523 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/138 (78%), Gaps = 7/138 (5%) Strand=Plus/Plus Query 52761 CCAGAGATGGGCGACAAGTTT-GC-GTCGTTCACGGCGCAAAAGGGGACGTGCGGAGCCG 52818 || ||||| ||||||||||| || |||| |||||| || ||||| |||||| | Sbjct 3352 CCCGAGATCGGCGACAAGTTCAGCAGTCGC-CACGGC-CAGAAGGGCGTGTGCGGCACGA 3409 Query 52819 TCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCC-GACCTCATCATC 52877 ||| | ||||||||||||||| ||| || | ||||| || |||||| ||||| ||||| Sbjct 3410 TCCGCAACCAGGAGGACATGCCGTTCAACGACGACGGCGT-GTGCCCGGACCTGATCATG 3468 Query 52878 AACCCCCACGCCTTTCCC 52895 ||||| |||| |||||| Sbjct 3469 AACCCGCACG-GTTTCCC 3485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406238220988992