Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq1720 179 2e-40 >seq1720 Length=5393 Score = 179 bits (198), Expect = 2e-40 Identities = 345/500 (69%), Gaps = 23/500 (5%) Strand=Plus/Minus Query 66248 CATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGA 66307 ||||||||| |||||| || | ||| | | ||||||||| |||||| || || |||| Sbjct 5201 CATCGACGCCGAGCACGCCATCGACGCGCACTACGCCAAGCAGCTCGGCGTCAACATCGA 5142 Query 66308 CAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCT 66367 | | ||| | ||||| ||| | ||||||||||| || ||||||| ||| || Sbjct 5141 CGAGCTCTACATCTCGCAGCCCGACTCGGGCGAGCAGGCGCTCGAGATCGCCGACACGCT 5082 Query 66368 CGTCAAGTCTGGCGAGCTGTCCA--TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCG 66425 || ||| |||| | ||| | |||||||||| ||| || || || || |||||| Sbjct 5081 TGTGCGGTCGGGCG--CCGTCGACGTCGTCGTCGTCGACAGCGTCGCTGCGCTTGTGCCG 5024 Query 66426 CGCGCCGAGCTCGAAGGCGACATCGGGGA-CAGTCACGTCGGCCTGCACGCGCGCCTCAT 66484 ||||||||||| |||||||| || || || ||| || ||| |||| ||||| ||||| Sbjct 5023 CGCGCCGAGCTGGAAGGCGAGATGGGCGATCAG-CAGATCGCGTTGCAGGCGCGGCTCAT 4965 Query 66485 GTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTC-CAGCA---CCAA---CACGCTGA 66537 | ||||| ||||||||||||| || ||| | |||| |||| || ||| | Sbjct 4964 GAGCCAGGCGCTGCGCAAGCTCACGGG----ATCGCTGAGCAAGTCCAACTGCATGCTCA 4909 Query 66538 CGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGA 66597 ||| | |||||| | ||| |||| | || | | | || || || |||| Sbjct 4908 ---TCTTCCTGAACCAGATCCGCCAGAAAGTGGGTATCCT---CTTTGGTTCGCCCGAGG 4855 Query 66598 CCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCA 66657 ||| ||||||||| ||| || | | |||||| || || || | || | || |||| Sbjct 4854 TCACGTCGGGCGGCACGGCGCTGCGCTACTACGCGTCCGTGCGGCTCGACATTCGGCGCA 4795 Query 66658 TCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCA 66717 ||| | ||||||||||| ||| ||||||||| | | || ||||||| || Sbjct 4794 AGGCCGCGATCAAGGAAGGCGACAAGGTCGTCGGCAACGAGATCGTCGTCAAGGTCGCCA 4735 Query 66718 AGAACAAGCTGGCCCCGCCG 66737 |||||||||| || ||||| Sbjct 4734 AGAACAAGCTCGCGTCGCCG 4715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240917194660800