Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq875 168 6e-37 >seq875 Length=8764 Score = 168 bits (186), Expect = 6e-37 Identities = 377/562 (67%), Gaps = 7/562 (1%) Strand=Plus/Plus Query 6395 TACACCGCCAACTCCATCTTCA--GGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGT 6452 ||||||| || | ||||||| | | ||| || ||| ||| ||||||| | |||||| Sbjct 6448 TACACCGACATCGCCATCTTGATCGTGCCA--TGAGGCTTGTAACCTTCCAGCTCGAAGT 6505 Query 6453 CCTCGCTCCTAAAGTCATCGATTGAGGTGA-CGGCTC--GAATAATTTTGAGCTGGGGGA 6509 ||||| ||| |||||||| | || | ||| | | || || ||| |||| Sbjct 6506 CCTCGAAGACAAACTCATCGATGCTGTTGGTCTTCTCTGGGTTGATCTTCAGCGTCGGGA 6565 Query 6510 ACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATAT 6569 | | || || || ||||| | | ||| | || | ||||||| |||||| | Sbjct 6566 AAGCCCGCGGGGTGCGGCCGAGCTGAACCTTAAGCGGTTCCACATGGTTCAAGTAGATGT 6625 Query 6570 GCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCA 6629 ||||||| || | ||| || | | || |||| | || ||| ||| || ||||| | Sbjct 6626 GCGCATCGCCGATCGTGTGGATGAAGTCTCCAGCACGCAGCCCTGTGACCTGCGCGATGA 6685 Query 6630 TGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCG 6689 || | ||| || || || |||||||| || ||||| || | |||||||| | | Sbjct 6686 GTCGAGTCAACAGCGCATAGCTCGCAATGTTAAAAGGCACGCCGAGTCCCATGTCAGCTG 6745 Query 6690 ATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGT 6749 | || || || | |||||| || ||||| || || ||||||||||| ||||||| ||| Sbjct 6746 AGCGCTGGTACATCTGGCACGAGAGCTCGCCGTTGGCGACGTAGAACTGGCAGAACATGT 6805 Query 6750 GGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCC 6809 | ||||| || ||||||||| ||| ||| |||||||| || |||| | ||| | Sbjct 6806 GACACGGCGGCAGCGCCATCTCCTTGAGGTCCGCAGGGTTCCATGCCGACATGATGATGC 6865 Query 6810 TTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCT 6869 | || | |||||| ||| | ||| || || | | |||||||| |||||| Sbjct 6866 GACGATCGTTTGGGTTCGTCTTGAGCTTGTGAATGACCTCCGCTAGCTGGTCGACTCCCT 6925 Query 6870 GTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACC 6929 | ||||| ||||| || | | | |||| || |||||||| | ||||||||| | Sbjct 6926 GGCCCGAGTAGTCGGCGTGCATGGTCGTGTACTTGGCACCAAAGTGGCGCCACTGGAAGC 6985 Query 6930 CGTAGACCGGGCCCAAGTCGCC 6951 | || || || || | ||||| Sbjct 6986 CATACACTGGTCCGAGATCGCC 7007 Score = 168 bits (186), Expect = 6e-37 Identities = 377/562 (67%), Gaps = 7/562 (1%) Strand=Plus/Minus Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 ||||| | || || || || || ||||||||| | |||||||| || |||| | Sbjct 7007 GGCGATCTCGGACCAGTGTATGGCTTCCAGTGGCGCCACTTTGGTGCCAAGTACACGACC 6948 Query 34454 AGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTG 34513 | | || ||||| ||||| ||||||| |||||||| | | || || ||| | Sbjct 6947 ATGCACGCCGACTACTCGGGCCAGGGAGTCGACCAGCTAGCGGAGGTCATTCACAAGCTC 6888 Query 34514 AAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCT 34573 ||| |||||| | || | | ||| | |||| || |||||||| ||| ||| Sbjct 6887 AAGACGAACCCAAACGATCGTCGCATCATCATGTCGGCATGGAACCCTGCGGACCTCAAG 6828 Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 ||||||||| || ||||| |||| ||||||| ||||||||||| || || ||||| Sbjct 6827 GAGATGGCGCTGCCGCCGTGTCACATGTTCTGCCAGTTCTACGTCGCCAACGGCGAGCTC 6768 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 || |||||| | || || || || | |||||||| | || ||||| || |||||||| Sbjct 6767 TCGTGCCAGATGTACCAGCGCTCAGCTGACATGGGACTCGGCGTGCCTTTTAACATTGCG 6708 Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTG 34753 || || || ||| | || | ||||| || ||| ||| || | |||| || | Sbjct 6707 AGCTATGCGCTGTTGACTCGACTCATCGCGCAGGTCACAGGGCTGCGTGCTGGAGACTTC 6648 Query 34754 GTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAG 34813 | || ||| | || |||||||| |||||| ||||||| | || | ||| | | ||| Sbjct 6647 ATCCACACGATCGGCGATGCGCACATCTACTTGAACCATGTGGAACCGCTTAAGGTTCAG 6588 Query 34814 CTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTC--GAGCCG-TCACCTCA 34870 || || || || | ||||| ||| || || | | ||| | || | Sbjct 6587 CTCGGCCGCACCCCGCGGGCTTTCCCGACGCTGAAGATCAACCCAGAGAAGACCAACAGC 6528 Query 34871 ATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTACCGGCCGCACTCGGCCC-- 34928 |||||||| ||| ||||||||||| | ||||||| ||| ||| || ||| | Sbjct 6527 ATCGATGAGTTTGTCTTCGAGGACTTCGAGCTGGAAGGTTACAAGCCTCA--TGGCACGA 6470 Query 34929 TGAAGATGGAGTTGGCGGTGTA 34950 | ||||||| | || ||||||| Sbjct 6469 TCAAGATGGCGATGTCGGTGTA 6448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448180726590720