Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4855 187 6e-42 seq4945 143 6e-29 seq170 136 9e-27 seq5374 107 5e-18 seq6828 93.3 1e-13 >seq4855 Length=1650 Score = 187 bits (206), Expect = 6e-42 Identities = 211/283 (75%), Gaps = 0/283 (0%) Strand=Plus/Plus Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504 ||||||| || ||||||| ||||||||| | | ||||| | ||| ||| | | |||| Sbjct 205 TATATTTGATTTTTGGTGCTTTTTCTGGTGTAGTTGGTACAACATTATCTCTTTTAATAA 264 Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACG 7564 | | |||||||| || ||| |||||| || | || ||| || | || || | Sbjct 265 GAATGGAATTAGCACAACCTGGTAATCAAATTTTTATGGGAAATCATCATTTATATAATG 324 Query 7565 TTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAG 7624 || || |||| |||||||| || | |||||||||||| | |||||||| || | || | Sbjct 325 TTGTTGTTACTGCGCATGCTTTCTTAATGATTTTCTTTATGGTTATGCCTATTTTAATTG 384 Query 7625 GCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAA 7684 | || ||||| || || ||||| ||||||||||| ||||| || ||||||||||| || | Sbjct 385 GAGGCTTCGGTAACTGGTTCGTACCTTTAATGATCGGTGCACCAGATATGGCTTTCCCTA 444 Query 7685 GGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | | || ||||| |||||||| ||| |||| ||||| ||||| Sbjct 445 GAATGAATAATATTAGTTTTTGGTTATTACCTCCTTCATTATT 487 Score = 93.3 bits (102), Expect = 1e-13 Identities = 85/105 (81%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || || ||||| || |||||||||||||| | | |||||| ||||| || || Sbjct 882 TTCAGGGTGTCCGAAAAACCAAAATAAATGTTGATATAATACAGGATCACCTCCACCAGA 823 Query 370732 TGGATCAAAAAAGCTAGT-ATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||| | || ||| ||| ||||||||||||||||| |||| Sbjct 822 TGGATCATAGAATGAAGTAATTTAAATTTCTATCAGTTAATAACA 778 Score = 91.5 bits (100), Expect = 4e-13 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||||||||| ||||||| ||| | || || | || |||| Sbjct 703 AAAGGTAATCTATGAAAACTTAAACCAGGAGCTCTCATGTTATAAATAGTTGAAAGAAAG 644 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | || || ||||| | | ||||||||||| || |||||||| Sbjct 643 TTAATAGCACCTAATAATGATGAAATACCAGATAAGTGTAAACTAAAAATAGCTAAATCT 584 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || || || || |||| | || ||| || |||||||| || || || Sbjct 583 ACAGAAGGACCTGAATGTGCTTGTACACTTGA---TAATGGTGGGTAAACAGTCCAACCA 527 Query 371542 GT 371543 || Sbjct 526 GT 525 >seq4945 Length=1612 Score = 143 bits (158), Expect = 6e-29 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||||||||| || || |||||||| |||||||||||||| ||||| Sbjct 558 GAAGATTTGACCATCAGTAATAGAAATTACGTTTGTAGGAATATAAGCAGAAACGTCACC 617 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | ||||||||| ||||||| ||| |||||||||| |||||||| Sbjct 618 AGCTTGAGTTTCAATAACAGGTAAAGCTGTTAATGAACCACCACCAATTTTTTTATT 674 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || || || |||||||||| | |||| |||||||||||||| ||||| ||||||||| || Sbjct 875 GCTCCTTATACAGGTTGTGCTTTAGGTGAATATTTTAGAGACAATGGAAAACATGCTGTA 816 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 || | || ||||||||| ||||||| Sbjct 815 ATTTTTTATGATGATTTATCTAAACAA 789 >seq170 Length=18893 Score = 136 bits (150), Expect = 9e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || |||||||| || || || || |||| ||||| || | | || Sbjct 6679 ACGAAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGT 6620 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || || || || || || || Sbjct 6619 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCC 6560 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||| ||| || ||| |||| || | || ||||| | Sbjct 6559 CTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAG 6500 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||||||| |||| ||| || | ||| | ||||| || Sbjct 6499 CGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTT 6455 >seq5374 Length=1410 Score = 107 bits (118), Expect = 5e-18 Identities = 89/105 (85%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 6767 TTGAGAGAATGATCAGCCACATTGGGAC-TGAAA-ACGGCCCAAGTCTTCTAAAAGGGCA 6824 |||| ||||||||||||||||||||||| ||| | ||||||||| || | ||||| || Sbjct 731 TTGAAAGAATGATCAGCCACATTGGGACCTGAGACACGGCCCAAACTTTTTTAAAGG-CA 789 Query 6825 GCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 ||||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 790 GCAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 834 Score = 102 bits (112), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 1398 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 1339 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| | |||||| | || | ||||| ||| | || Sbjct 1338 GGCTCCCGTCAATTCCTTTGAATTTCGATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 1279 Query 7850 TACGCGTTAGCTTAATTAATATAAAAA 7876 |||||||||||| || || |||||| Sbjct 1278 AACGCGTTAGCTTGAT--ATCTAAAAA 1254 >seq6828 Length=941 Score = 93.3 bits (102), Expect = 1e-13 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 ||||| ||||||||| |||| ||||||||||| ||||||| ||||||| ||||| | | Sbjct 167 AGGTGGCACAGAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGG 226 Query 372683 TAAAACGATGTAT-AGGGTCTGACAC 372707 ||| | ||||||| |||||||||||| Sbjct 227 TAACATGATGTATAAGGGTCTGACAC 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192308488835744