Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950915.1_202016-12-27] 14,576 sequences; 35,372,432 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq170 176 9e-39 seq36 120 6e-22 seq2220 114 3e-20 seq1199 89.7 1e-12 >seq170 Length=18893 Score = 176 bits (194), Expect = 9e-39 Identities = 185/241 (77%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || |||||||||||||| | Sbjct 6685 ACCACCACGAAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 6626 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||||| ||||||| || || || || || Sbjct 6625 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGG 6566 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| |||||||| ||||| || | || || ||||||||| |||| Sbjct 6565 GATTCCCTCCTTGTCCTGGATCTTCTGCTTG-ACATTGTCAATGCTGTCCGAAGGCTCGA 6507 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACA 283110 | ||||| ||||||||||| || |||| |||||| ||||| |||||||| || | |||| Sbjct 6506 CGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTTTACCTACA 6447 Query 283111 A 283111 | Sbjct 6446 A 6446 >seq36 Length=34223 Score = 120 bits (132), Expect = 6e-22 Identities = 674/1057 (64%), Gaps = 53/1057 (5%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||| ||||| |||| ||| ||||| || Sbjct 10337 TCCTTGTCCTCACCCGACTGGAAACGCCACTGGATATACTGGTTGGCCGTAATGTCGAGG 10278 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||||| |||||||||||||||||||| || ||||| || | |||||| || ||| Sbjct 10277 TGCTCCTCAATGTGGTGGAAAGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTGC 10218 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||||| |||| || | || || || |||| || ||||| || Sbjct 10217 TTCCACACCGTACCGACCGTAGGCTCGACCTCACCCGTCAGCATCTTGATGAGCGTCGAC 10158 Query 316342 TTTCCCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAGCGATACCTGGGCATTC 316401 || || || ||||| ||| | || | || | ||| ||||| || | || Sbjct 10157 TTACCGGCACCGTTCGGACCGATAACGGCAATACGCGAGGCCAGCGA-ACACG-----TC 10104 Query 316402 ACGT---TGTC---GAAGACCAGTTTGTCCGTCCCAGGATACTTG-AAACCCACCCCGCG 316454 |||| |||| || | | ||||| ||||| |||| | | || || | Sbjct 10103 ACGTTGATGTCACGGATCGACGGCTTGTCGCGGCCAGGGTACTGGTACGAGCAGTTCGTG 10044 Query 316455 AAGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGAAAGCCGGGTTCGGG 316511 || ||||| ||| || |||| ||||| | | || || || || || || Sbjct 10043 -AGACGAATGATCGGCTTAC---CCTTGTTCTTGATATCAGCAAGGAAACCCGGCTCAGG 9988 Query 316512 GAATTTCCAC--GTAGTCTTCGTCTCGGCGAGCGTGTAGTA--ACTTGCAGATTCGGGAC 316567 ||| | || | || | || | | ||| |||||| |||| | || || Sbjct 9987 GAACGTGAACTTGAAGGCAGCG--GCCTCAAGCTCGTAGTACGTCTTG--GCCTCCGGCT 9932 Query 316568 GCTTCTTCACGAATTCGGACAGATTTCCTTTATACTTCTTCAGCTTCAGGTTGGGTTCGT 316627 || ||| ||||| ||||| || || || || ||| |||| ||||| |||| |||| Sbjct 9931 TCTGCTTGACGAACTCGGAGAGGTTACCCTTGTACGTCTTGAGCTTACGGTT---CTCGT 9875 Query 316628 AATGGATGATAGAAGTACAGACAGCATCGAGGAAACCAGAATCGTGTGATACAATCACAC 316687 | |||||||| || ||||| | |||||||||||||| ||||| || || || | Sbjct 9874 AGTGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCAGAGTCGTGCGACACGATGAGCG 9815 Query 316688 ATGAAACGCCTTTTAGGTTGACCAGATAGTCGATCAGCCAGCTCACATTCGACACAGAAA 316747 | | ||| | ||| | || ||||| ||||| | || || |||| | Sbjct 9814 ACGTCACGTTCGTGAGGCTCGTGAGGTAGTCCTCGAGCCACTTGACGTTGTGCACATCCA 9755 Query 316748 GATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCTTCGCGTCCAACAGCATAGCGCGTGCGA 316807 ||||| ||||| || ||||| || || | | || | || ||||| || || || | Sbjct 9754 AGTGGTTCGTCGGCTCATCAAGAAGGAGGATATCAGCCTTCATGAGCATGGCACGGGCCA 9695 Query 316808 GAGCAAGCTTCATTTTCCACCCCCCGGAAAGAGTGTTAATCG--GGGCA--GATTGGCGC 316863 | |||||||| ||||| || || |||| | | || |||| | || | Sbjct 9694 ACTCGAGCTTCATCTTCCAACCACC----AGAGAGGGCACCGACAGGCATGGCCTGCATC 9639 Query 316864 TCAACATCAAAGCCAACTGATTCGAGAGTA-GACAC-GATTTTTTCACGAGACCATGTGT 316921 || | ||||| || ||| ||| | | ||| || | ||||| | || | Sbjct 9638 TCGGCCGTGAAGCCGAC--GCTCGTGAGCATGTCACGGACCTCCTCACGCG-GCAGG--- 9585 Query 316922 TTTCTTTAACTTGG--TCGTCATTGGCAATGAAGTCAACGATAGACGTGTTAGATTCGGA 316979 ||||| | || |||||| | |||||||||| || | | || || Sbjct 9584 -TTCTTGA---GGGCCTCGTCACAGAACATGAAGTCAATGACCGGAAGCTCAGCCTCCTC 9529 Query 316980 TCCGTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTC 317039 | | ||||| ||||| || | | || || || ||||| |||||||| || || Sbjct 9528 AGCCTGGAGGTTGTGCTCGACGAAGACCGTCTTGAGCTCATCCTGGGTCGGGAAACCCTC 9469 Query 317040 CAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCA 317099 | ||| |||||| || || | ||| || |||||||| || ||| || |||||||| Sbjct 9468 GAGCTGGCCGTTCGAGATGGCGCGCATAAGCGTCGACTTACCGCAACCGTTCGGGCCGCA 9409 Query 317100 AAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACC 317159 ||||| || || | || ||| || | ||||| ||||||||| |||||| |||| Sbjct 9408 GAGACCGTAGCGGTGGCCACGCTTGAGGCGGAGACGGGCGTTGTTCAGCAGAATCATACC 9349 Query 317160 ACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 ||| || || || |||||||| || | || || ||| Sbjct 9348 ACCGTACGCGAGCGAGAACTCGCAGTTGCAGAGATCC 9312 >seq2220 Length=4288 Score = 114 bits (126), Expect = 3e-20 Identities = 197/281 (70%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 273779 CGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTG 273838 |||||| || || | | |||||| ||||||||| || ||||| | || |||||||| Sbjct 1606 CGTGAAGATATAGCGTGGACTCGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTG 1665 Query 273839 ACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCAC 273898 ||| || ||| | | |||||| |||||| || ||||| ||||| || || Sbjct 1666 TCCCGACGGATACAGCAATGGCAGGTTGTTAGCACCGACATAGTCCTGCGCCATGTTGAC 1725 Query 273899 GATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA-TAAC 273957 || ||| || || || ||||||||||||| || || |||| || || | | |||| Sbjct 1726 AATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCTC-GCTACAGTAAC 1784 Query 273958 CACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGA-ATGCGGAATACAAC 274016 || || ||| || ||||| || || |||||| || ||||| | | || | ||| | Sbjct 1785 CAGCGAGCTGCGCGACCTTGACCTCCTTCGTCAGCTTGCGCTTCAGACACGCGA-ACAGC 1843 Query 274017 ACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGG 274057 ||||| ||||||||| ||||| ||| || || || || || Sbjct 1844 ACCTTGCGCTGCGAGACCTTGAGCCCGTCGACCACGGACGG 1884 >seq1199 Length=7073 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 973 ACCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 1032 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGAT 282970 |||||||||||| ||||| || || || ||||| ||||| Sbjct 1033 AAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGAT 1071 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||| |||||||| ||| || || | || || | ||||| | ||||| Sbjct 1153 TACCCTCCTTGTCCTGGATCTTCTGC-TTGACATTGTCAATGCTATCCGAGGGCTCGACG 1211 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||||||||| ||||| | ||||| ||||| |||||||||||| Sbjct 1212 TCCAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATTTTC 1262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046543716220704