Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq238 203 7e-47 seq44 98.7 2e-15 >seq238 Length=20387 Score = 203 bits (224), Expect = 7e-47 Identities = 691/1057 (65%), Gaps = 51/1057 (5%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| ||||| || ||||||| ||||| |||||||||| || ||||| || Sbjct 7011 CTCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTAATGTCGAG 7070 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||||| |||||||||||||| ||||| || ||||| || | |||||| || || Sbjct 7071 GTGCTCCTCAATGTGGTGGAAAGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTG 7130 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||||| || | || | | ||||| |||| ||| ||||| || Sbjct 7131 CTTCCACACCGTACCGACCGTAGGCTCGACCTCACCCGTCAGCATCTTGATGAGCGTCGA 7190 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATT 319229 || || |||||||| ||| | || | || | ||| |||||| || | | Sbjct 7191 CTTACCGGCACCGTTCGGGCCGATAACGGCAATACGCGAGGCCAGCGA-ACACG-----T 7244 Query 319230 CACGTTG---TCAAAGATTA---GTTTTTCCGTACCCGGATACTTGAACCCCACACCGCG 319283 ||||||| ||| ||| | || || || || |||| | || || || Sbjct 7245 CACGTTGATGTCACGGATCGACGGCTTGTCGCGGCCAGGGTACTGGTACGAG-CAGTTCG 7303 Query 319284 T-AGCTTCATGAT-GGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGG 319339 | || ||||| ||| || | ||| ||||| | | ||||| || ||||| | Sbjct 7304 TGAGACGAATGATCGGCTTACCCTTGTTCT---TGATATCAGCAAGGAAACCCGGCTCAG 7360 Query 319340 GGAACTTCCACGTG--GTCTTCGTC-TCGGTAAGGGCGTAGTAACTCGCTGATTCGGGAC 319396 ||||| | || || | | || | || ||| ||||||| || | || || Sbjct 7361 GGAACGTGAACTTGAAGGCAGCGGCCTC---AAGCTCGTAGTACGTCTTGGCCTCCGGCT 7417 Query 319397 GCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGT 319456 || ||| ||||||||||| || || ||||||||| |||| ||||| |||| |||| Sbjct 7418 TCTGCTTGACGAACTCGGAGAGGTTACCCTTGTACGTCTTGAGCTTACGGTT---CTCGT 7474 Query 319457 AATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGC 319516 | ||||| || ||||| || | ||||||||| || |||||||| ||||| || | Sbjct 7475 AGTGGATGATGTTCGTGCAGACCGTGTCGAGGAAACCAGAGTCGTGCGACACGATGAGCG 7534 Query 319517 ACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAA 319576 ||| |||| | | ||| | | ||||| || | |||| | ||||| |||| | Sbjct 7535 ACGTCACGTTCGTGAGGCTCGTGAGGTAGTCCTCGAGCCACTTGACGTTGTGCACATCCA 7594 Query 319577 GATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAA 319636 ||||| |||||||| |||||||| || | | || |||| |||||| ||||| || | Sbjct 7595 AGTGGTTCGTCGGCTCATCAAGAAGGAGGATATCAGCCTTCATGAGCATGGCACGGGCCA 7654 Query 319637 GAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAA 319696 |||| ||||| ||||| || || | |||| | |||| |||| || | Sbjct 7655 ACTCGAGCTTCATCTTCCAACCACC--AGAGAGGGCACCGACAGGCA---TGGC-CTGCA 7708 Query 319697 TATC------AAAGCCAACCGATTCTAGAGTA-GTTAC-GATCTTTTCACGAGACCAAAT 319748 | || ||||| || || ||| | || || || || ||||| | | | Sbjct 7709 TCTCGGCCGTGAAGCCGAC--GCTCGTGAGCATGTCACGGACCTCCTCACGCGGC---AG 7763 Query 319749 GTTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGTGTTAGAATCGGA 319808 ||| ||| | || ||| | ||||||||||||| | | || || Sbjct 7764 GTT---CTTGAGGGCCTCGTCACAGAACATGAAGTCAATGACCGGAAGCTCAGCCTCCTC 7820 Query 319809 CCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTC 319868 | | ||| | ||| || ||| | | || || | ||||| | ||||| || || Sbjct 7821 AGCCTGGAGGTTGTGCTCGACGAAGACCGTCTTGAGCTCATCCTGGGTCGGGAAACCCTC 7880 Query 319869 AAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACA 319928 |||||||||||| || |||||||| || || || ||||| ||||| || || || Sbjct 7881 GAGCTGGCCGTTCGAGATGGCGCGCATAAGCGTCGACTTACCGCAACCGTTCGGGCCGCA 7940 Query 319929 CAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCC 319988 ||||||||||||| || || || ||| || || | ||||||||| ||||| | || Sbjct 7941 GAGACCGTAGCGGTGGCCACGCTTGAGGCGGAGACGGGCGTTGTTCAGCAGAATCATACC 8000 Query 319989 ACCATATGCCAGAGAAAATTCACAATCACACAGATCC 320025 ||| || || || || || || || | || |||||| Sbjct 8001 ACCGTACGCGAGCGAGAACTCGCAGTTGCAGAGATCC 8037 >seq44 Length=43120 Score = 98.7 bits (108), Expect = 2e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 281741 CGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTG 281800 |||||||||||| | | ||| ||| ||| || || |||||||| | || |||||||| Sbjct 26470 CGTGAAGATATAGCGCGGACTTGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTG 26529 Query 281801 ACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGAC 281860 ||| ||| ||| | | | ||| || ||||| || ||||| |||| |||||| Sbjct 26530 TCCCGACGGATACAGCAATGGCAGGTTGTTAGCACCGACATAGTCCTGCGCCATGTTGAC 26589 Query 281861 GATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACA-TAAC 281919 || ||| || ||||| |||| |||||||| || || |||| || || ||| |||| Sbjct 26590 AATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCTC-GCTACAGTAAC 26648 Query 281920 CACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTT 281962 || || ||| || ||||| || || |||| ||||| || Sbjct 26649 CAGCGAGCTGCGCGACCTTGACCTCCTTCGTCAGCTTGCGCTT 26691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057673774446920