Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq217 246 7e-60 seq2451 127 4e-24 seq45 86.0 1e-11 >seq217 Length=20966 Score = 246 bits (272), Expect = 7e-60 Identities = 622/933 (67%), Gaps = 26/933 (3%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || |||||||| | ||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 18510 GACTTTGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCTCCTGCGCGTC 18451 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | ||||||| ||| || || ||||| ||| | |||| || |||||||| || ||| Sbjct 18450 GGTGGCAAGGTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCAC 18391 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 ||| ||||||| || || ||||||||||||| ||| || ||| | || Sbjct 18390 AAGCATGACATCGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACG 18331 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTT 249048 || || || |||||||| ||||||||||| || | |||||| |||||||| Sbjct 18330 CACGCGACGCCGACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTC 18271 Query 249049 CTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCG 249108 || || |||||| | |||||||| |||| ||||| ||||||||||| || ||| || Sbjct 18270 CTGCTCGCCATGAAGGACGACTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCC 18211 Query 249109 AAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGT 249168 || || || | || ||||| || ||| || ||| ||||||||| |||| Sbjct 18210 TGCATCTCCAAGTGGGCCGGCGGCATTGGTGTCAGCGTGCACAACATCCGCGCGACCAAC 18151 Query 249169 TCGTACATCAAAGGTACAAATGGGGTCAGTG-ATGGTATCGTACCCCTCCTTCGATGCTT 249227 ||||||||| || || || || || | | || |||| ||| | || || || Sbjct 18150 TCGTACATCCGTGGCACGAA-CGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTT 18092 Query 249228 TGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCAT 249284 | ||| || | | | | |||| || || || ||||| |||||||| || Sbjct 18091 CAACGACACGGCGCGTTATGTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGAT 18032 Query 249285 GTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGG 249344 |||| | || |||||||||||| || || |||||||| ||| | || |||||| |||| Sbjct 18031 GTATCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGG 17972 Query 249345 CAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCAT 249404 ||||||||| | || ||||| || ||||||| ||||| | |||| | ||||| Sbjct 17971 CAACGAGCTGCACCGCGCTCGTGATCTGTTCTACGCGATGTGGATTCCCGATCTCTTCAT 17912 Query 249405 GCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCT 249464 | ||||| ||||| ||||||| |||| || | | ||| ||| || |||| || Sbjct 17911 GAAGCGCGTTGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCACCGGGTCT 17852 Query 249465 C--ATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATA--AGAAATACGAATCCAAC 249519 | ||| | || | ||| |||| | || || || | | ||||| | | Sbjct 17851 CTACACGACGT--GGGGTGACGAGTTCG---AGGCGCTGTACCACCAGTACGAGCGCGAG 17797 Query 249520 GGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCC 249573 ||| || ||||||| ||| || | | || || |||| | | ||||| Sbjct 17796 GGCCGCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGA---TCCTCGAGTCG 17740 Query 249574 CAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGAGTAAC 249633 ||||| ||||| || |||||| ||| ||| ||| |||| ||| |||| ||| Sbjct 17739 CAGATCGAGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGTAACCGCAAGTCGAAC 17680 Query 249634 CAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATTCAATACTC 249692 || | | | || || || ||||||||| || ||||| ||| |||||| | | ||| | Sbjct 17679 CAGCAGAACCTCGGCACGATCCGCTCGAGCAACCTCTGCTGC-GAGGTGCTCGAGTACAC 17621 Query 249693 GTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 ||| || ||| | || || |||||||| || Sbjct 17620 GTCGCCCGACGAGGTCGCGGTGTGCAACCTCGC 17588 >seq2451 Length=3575 Score = 127 bits (140), Expect = 4e-24 Identities = 198/276 (72%), Gaps = 9/276 (3%) Strand=Plus/Minus Query 254106 CTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACT 254165 |||||||||||||| || ||||| ||||| | | ||||| ||||| || |||||| Sbjct 2708 CTCGAGCTGAACGCCTCGGACGATCGCGGCATCAAGGTCGTGCGCGAGAAAGTCAAGAGC 2649 Query 254166 TTCTC-CAAGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGAT 254224 ||| | || | || |||| | | || ||||| ||||| |||||| || | | Sbjct 2648 TTCGCGCAGGGTG-CGATCA-GCAGCTCGT--CCGGCATGCCGCCGTTCAAGATCATCGT 2593 Query 254225 CCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGA 254284 ||||||||||| ||| | ||||| | |||||||||||| || || || || | |||||| Sbjct 2592 GCTGGACGAGGCCGACTCGATGACCGGCGACGCGCAGTCGGCACTGCGTCGCATGATGGA 2533 Query 254285 GACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATC 254342 | ||||| || ||||| || ||||| | || |||||||| | || | ||||| Sbjct 2532 AAACTACTCCAAGGTCACGCGCTTCTGCCTCATCTGTAACTACGTCAGCCGCA--TCATC 2475 Query 254343 GCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTC 254378 | ||| | || || || || ||||||||||| ||| Sbjct 2474 GAGCCGATCGCGTCGCGTTGTGCCAAGTTTCGGTTC 2439 >seq45 Length=43062 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 157243 AACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAG 157302 ||| |||| ||| ||||||| |||| | ||||| || ||||||||||| |||||||| Sbjct 42135 AACGCCGGCCTTCGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAG 42076 Query 157303 AGAAATCATGTCCATCCACTCGAATGGGTT 157332 || |||||||||||||| || || ||||| Sbjct 42075 CGAGATCATGTCCATCCAGTCAAACGGGTT 42046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073613910406912