Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq217 464 6e-126 seq45 235 5e-57 >seq217 Length=20966 Score = 464 bits (514), Expect = 6e-126 Identities = 1040/1540 (68%), Gaps = 42/1540 (3%) Strand=Plus/Plus Query 22466 AACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTC 22524 |||||||| | |||| |||||||| | ||| ||||||| |||||||| |||| || || Sbjct 17024 AACTCGCCTG-CAAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTC 17082 Query 22525 ATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTT 22584 ||||| || || ||||| |||||||| || |||||||||||||| | ||| |||||||| Sbjct 17083 GTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTT 17142 Query 22585 TCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACG- 22643 | || ||||| || | | | ||||||| | ||||||||| || |||||| Sbjct 17143 GCGCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCAGAGGCCGGACGT 17202 Query 22644 --GCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 |||| || | ||||||| ||||| || || | ||| ||| | || ||| || Sbjct 17203 CGGCGTGAC---GCCCCACATGTCGTACTGGAAGATGCCCTTGCTCACGGGTGAGCCCTC 17259 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCG-CCTCCAACGCGCCGT 22760 ||| | ||||||| || | | || || || || | | |||||| ||||||| Sbjct 17260 GTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTC-CATCGAGGCCTCCATCGCGCCGA 17318 Query 22761 AATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCA 22820 | || | ||||||||||| |||||||| | ||| || || |||| || ||| | Sbjct 17319 AGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGTGCCTCGTCGCTCTCAAACG-CG 17377 Query 22821 TA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTT 22879 || | ||| | | |||||||||||| | |||||| ||||| || |||||||| |||| Sbjct 17378 TAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGG 17437 Query 22880 TTCAGATT-CGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTT 22938 ||| || | | || |||||||| | || || | || ||||| |||| Sbjct 17438 CGCAGGTTGCTTCGCTCG-GCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTT 17496 Query 22939 CAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC--- 22995 | ||| | || || | || || || | |||||| || | | Sbjct 17497 GAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTTCTTGAAGTCG--AAGGTCTTG 17554 Query 22996 -CGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGT 23054 || | || || |||||||| | ||||| || || || ||||| || || ||||||| Sbjct 17555 TCG-TCGTTCA-CAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGT 17612 Query 23055 CTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAAT 23114 | ||||||||||| | | ||| || || ||||| | |||||||| | | Sbjct 17613 CGGGCGACGTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGT 17672 Query 23115 TGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCT 23174 | |||||| || || || ||||| |||||||| |||||||||||||||||||||| Sbjct 17673 TCTGCTGGTTCGACTTGCGGTTACACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCT 17732 Query 23175 CGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC- 23233 ||| ||||||||||| |||||| ||| | ||| ||| | | |||| || | Sbjct 17733 CGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGAT-CGTCTTGCGCGCG 17791 Query 23234 CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCC 23293 | ||| || |||||||| ||||||| ||| || || ||| |||| | |||| Sbjct 17792 CGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCACCCCAC--GTCGTGT 17849 Query 23294 AGG--CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTC 23351 || || || | | |||| || | || |||||| || |||||||| Sbjct 17850 AGAGACCCGGTGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCT 17909 Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || ||||| || ||||| | ||||||||||| || || ||||| | ||| | Sbjct 17910 TCATGAAGAGATCGGGAATCCACATCGCGTAGAACAGATCACGAGCGCGGTGCAGCTCGT 17969 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 ||||| |||||| || | || | || || || | ||| || |||||||||||||| | Sbjct 17970 TGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGAT 18029 Query 23472 AAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGT 23531 | | || |||| |||| | ||| ||| |||||||| || ||||| ||||||| || Sbjct 18030 ACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGT 18089 Query 23532 TGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCG 23591 || |||| | ||||| |||||||| ||||| |||| |||| | || ||||| | Sbjct 18090 TGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCG--TTCG--TGCCACGGATG 18145 Query 23592 AAC--CTT--TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGAT 23647 || || | || || | |||||| ||| || ||| ||||| ||| || | || || Sbjct 18146 TACGAGTTGGTCGCGCGGATGTTGTGCACGCTGACACCAATGCCGCCGGCCCACTTGGAG 18205 Query 23648 ATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCG 23707 || ||||| || || || ||||| |||||||||||||| ||| || || | ||| Sbjct 18206 ATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCGTCCTTCATGGCG 18265 Query 23708 ACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTG 23767 | || ||| ||||| |||| |||| ||||| |||| |||||| ||||| | Sbjct 18266 AGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTC 18325 Query 23768 GCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC 23827 |||||||| ||| | | | |||||| | |||||| |||| ||||| || ||||| Sbjct 18326 GCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCA 18385 Query 23828 TCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTG 23884 | ||| || |||| |||||||||| ||||| | || || | || ||||| || Sbjct 18386 TGCTTGTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCGCTCAGCGACCTTG 18445 Query 23885 ACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAG 23944 | ||| | | || || || | | ||| || || ||||| ||||| || Sbjct 18446 CCACCG---ACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTAC 18502 Query 23945 TTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGT 23984 | |||||| || ||||| | || ||||| || | |||| Sbjct 18503 TCAAAGTCGCGGTCGTGGATGATCGCCGAGTTGAGGCGGT 18542 >seq45 Length=43062 Score = 235 bits (260), Expect = 5e-57 Identities = 558/828 (67%), Gaps = 14/828 (2%) Strand=Plus/Plus Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632 ||| | |||||||| ||||| || || || ||||| | ||||| | ||||| Sbjct 41284 TGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGGACGGCTGAAGAGATTGACCTCGTG 41343 Query 57633 AAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTG 57692 | || || | || ||| | ||||| || ||| | | ||||| || |||||| Sbjct 41344 CACGACCTCAAGGACTGGAACAACCTCACGGACAACGAGCGCTACTTTATCAAGCACGTG 41403 Query 57693 TTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA 57752 | ||||| ||||| || ||||| || || |||||||| | | ||| | ||| Sbjct 41404 CTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCG-CGATGAACTTTAG 41462 Query 57753 CAA-GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAA 57811 || || ||||| || | |||||| | ||||| ||||| || || | || ||||| || Sbjct 41463 CAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCGATTGAGAA 41522 Query 57812 CGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAA 57871 | | || || || |||| ||||| |||||||| |||||| | |||||| | |||||| Sbjct 41523 CATCCACTCGGAGGTGTACTCGCTGCTCATCGACACGTACATCAAGGACCAGACCGAGAA 41582 Query 57872 -ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCC-AAGAAGGCAGAGTGG 57929 | | | ||| ||| ||||| || || ||| | || |||||||| | ||| Sbjct 41583 GAACCACCTTCTTCG-CGCCATCGAGACGAT-CCCTTGTGTGCAGAAGAAGGCCCACTGG 41640 Query 57930 TCAATCAAATGGATAAAAA-GCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGC 57988 | |||| ||| | ||||| || || ||||||||||| | | |||||||||| Sbjct 41641 GCGCTCAAGTGGTGCGACTCGCGCCGCG-CCGCGTTCGCCGAGCGTATCGTCGCGTTCGC 41699 Query 57989 CGCCGTCGAAGGTATATTCTTTTCGGGC-AGCTTTGCGGCAATATTTTGGATGAAGAAAC 58047 |||||||| || || ||||| |||||| | | ||| | || || ||| | ||||| | Sbjct 41700 TGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-TCTATCTTCTGGCTCAAGAAGC 41758 Query 58048 GCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCC 58107 ||||||| ||||| ||||| | || |||||| | || ||||| ||||||||||||| Sbjct 41759 GCGGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACGAGGGTCTCC 41818 Query 58108 ATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCA 58167 | || || |||||||| ||||||| | | | ||| || | | | ||||| Sbjct 41819 ACTGCGACTTCGCGTGCCTGCTGTACTCCAAGCTCGCCAACAAGCTCCCTGAGTCTCGCA 41878 Query 58168 TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTAC 58227 || || || || ||| || ||||||||||| || ||||| ||| || | || | Sbjct 41879 TCCACGAGATCATTCGCGATGCCGTCGCGATCGAGAAGGAGTTCGTCCAGGACTCGCTCC 41938 Query 58228 CGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCG 58287 |||||| | ||||||||||| | | |||| ||||||||||||| |||| Sbjct 41939 CGGTGGAGCTCATCGGTATGAACTCGTCTCTCATGTGCCAGTACATTGAGTTCTGCGCCG 41998 Query 58288 ACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGA 58345 | | || | | || || | | | | || ||||| | || |||||||| Sbjct 41999 ATCGCCTCCTCCACGCGCTTGGCGTTGCCAAGATC--TACAAGGTGTCGAACCCGTTTGA 42056 Query 58346 TTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 | ||| | ||||||||||| |||||||||| ||||| ||||| || Sbjct 42057 CTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAA 42104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445704639065280