Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq45 161 1e-34 >seq45 Length=43062 Score = 161 bits (178), Expect = 1e-34 Identities = 571/870 (66%), Gaps = 54/870 (6%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCT-GTC 125080 ||| | |||||||| |||||| |||| ||| ||||||| |||||| | || || || Sbjct 41284 TGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGGACGGCTGAAGAGATTGACCTCGTG 41343 Query 125081 CAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCA 125140 || | |||| | || ||| | | | | || || | ||||| | ||||| ||| Sbjct 41344 CACG-ACCTCAAGGACTGGAACAACC---TCACGGACAACGAGCGCTACTTTATCAAGCA 41399 Query 125141 CATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT---GTTGACACG 125197 | | | || ||||| || | | ||||| ||||||||||| || || | ||| Sbjct 41400 CGTGCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCGCGATGA---- 41455 Query 125198 ATTCTCTCAA-GAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 | | | || ||| || |||| |||| | ||||| ||||| ||||| || || Sbjct 41456 ACTTTAGCAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCGA 41515 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGC 125316 |||||||| | |||||||| ||||||| || || |||| |||||| || | | Sbjct 41516 TTGAGAACATCCACTCGGAGGTGTACTCGCTGCTCATCGACACGTACATCAAGGACCAG- 41574 Query 125317 AACGTAAACA-CATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | || || | | || || ||| ||||| ||| | || | | | | || ||||| Sbjct 41575 ACCGAGAAGAACCACCTTCTTCGCGCCATCGAGACGATCCCTTGTGTGCAGAAGAAGGCC 41634 Query 125376 CAATGGGTGATTCGGTGGATCGA-TGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 || |||| | | |||| ||| | || | | | ||| |||||| | | || || Sbjct 41635 CACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCGCCG-CGTTCGCCGAGCGTATCGTCGC 41693 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCA 125493 ||||| ||||| |||||||||||||| ||||| | ||| ||| | ||||| ||||||| Sbjct 41694 GTTCGCTGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGCT-CTATCTTCTGGCTCA 41752 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 |||||||||| || ||||| || || | | |||||| | || || || ||||||| Sbjct 41753 AGAAGCGCGGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACGAGG 41812 Query 125554 GCCTACACTGTGACTTTGCCATTCTACTGT--------TTCG-CAACTATCTGCGTCCCG 125604 | || ||||| ||||| || || |||| ||| |||| | || || | Sbjct 41813 GTCTCCACTGCGACTTCGCGTGCCTGCTGTACTCCAAGCTCGCCAACAA---GCTCCCTG 41869 Query 125605 AGT-GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAA 125663 ||| | ||||| || || |||| | | ||||||||| ||| || Sbjct 41870 AGTCTCGCATCCA-CG------AGATCAT-----TCG----CGATGCCGTCGCGATCGAG 41913 Query 125664 CAAGAGTTTCTAACCGAATCCCTACCGGT-CAGCATGATTGGCATGAACTGCAAGCTAAT 125722 | ||||| | || || || ||||| ||| | || || ||||||| || || Sbjct 41914 AAGGAGTTCGTCCAGGACTCGCTCCCGGTGGAGC-TCATCGGTATGAACTCGTCTCTCAT 41972 Query 125723 GTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAG--TTGATTGGCCGCAAG 125780 |||| ||||||| ||||| || ||||| || || ||| | | | | || |||| Sbjct 41973 GTGCCAGTACATTGAGTTCTGCGCCGATCGCCTCCTCCACGCGCTTGGCGTTGC--CAAG 42030 Query 125781 ATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACC 125840 || ||||| | ||| || ||||| | ||| || || || || |||| |||||| Sbjct 42031 ATCTACAAGGTGTCGAACCCGTTTGACTGGATGGACATGATCTCGCTCCAGGGCAAGACC 42090 Query 125841 AACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||||| ||||||||| || |||||||| Sbjct 42091 AACTTCTTCGAGAAGCGCGTGGGCGAGTAC 42120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740956526247840