Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4389 190 3e-44 seq344 174 2e-39 seq603 127 3e-25 >seq4389 Length=1470 Score = 190 bits (210), Expect = 3e-44 Identities = 188/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| |||||| ||||||||||| || ||||||||||| || || Sbjct 1038 CGCTAAGCGTCATCGCAAGGTTCTTCGCGATAACATCCAGGGCATCACCAAGCCTGCCAT 979 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| |||||||||||||| ||||||||| ||||||| | ||||||| |||| Sbjct 978 CCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGCCTTATCTATGAGGAGAC 919 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| |||||||| ||| ||| |||| || | || || || || Sbjct 918 CCGTGGTGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGGGACTCGGTCACGTACACGGA 859 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || |||||||| || || ||||||| ||||||| || | || ||||| || Sbjct 858 GCATGCGCGCCGTAAGACCGTTACTGCCATGGACGTCGTCTACGCCCTCAAGCGTCAGGG 799 Query 16672 CCG 16674 ||| Sbjct 798 CCG 796 >seq344 Length=16964 Score = 174 bits (192), Expect = 2e-39 Identities = 203/274 (74%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 4177 CGCTAAGCGTCACCGCAAGGTTCTTCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 4118 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||||||||| || ||||||||| |||| || || |||| || |||| Sbjct 4117 CCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCGGGTCTGATCTACGAGGAGAC 4058 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| || | | ||| || || Sbjct 4057 GCGCGGTGTGCTCAAGGTCTTCCTTGAGAACGTCATCCGCGACTCGGTGACCTACACGGA 3998 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| |||| || || | || ||||| || Sbjct 3997 GCACGCGCGCCGCAAGACCGTCACGGCCATGGACGTCGTGTACGCGCTCAAGCGTCAGGG 3938 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||| | | | || ||||| || ||||| | ||| Sbjct 3937 CCGCACGCTCTACGGTTTCGGTGGTTAAGCGTCT 3904 >seq603 Length=12427 Score = 127 bits (140), Expect = 3e-25 Identities = 189/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| ||||| || |||||||| || ||||| ||||| || || Sbjct 2094 CGCCAAGCGCCATCGCAAGGTGCTTCGTGACAACATCCAGGGCATCACGAAGCCGGCGAT 2153 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| || || || |||||||| || || | |||| || |||| Sbjct 2154 CCGCCGTCTCGCTCGCCGAGGAGGTGTCAAGCGCATCAGCGGTCTCATCTACGAGGAGAC 2213 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | |||||| ||| ||| |||| || | || || || || Sbjct 2214 GCGCGGTGTGCTCAAGGTGTTCCTCGAGAACGTGATCCGCGACTCGGTCACGTACACGGA 2273 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||||||||| | |||||| ||||||| || | || || || || Sbjct 2274 GCACGCGCGCCGCAAGACTGTCACGGCGATGGATGTCGTCTACGCGCTCAAGCGACAGGG 2333 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || || |||||| | ||| Sbjct 2334 ACGCACGCTCTACGGCTTTGGAGGCTAA 2361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065065821212