Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq217 273 2e-68 seq3662 96.9 3e-15 seq45 82.4 7e-11 >seq217 Length=20966 Score = 273 bits (302), Expect = 2e-68 Identities = 956/1462 (65%), Gaps = 53/1462 (4%) Strand=Plus/Plus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || |||| | |||||||| || | ||| || || |||| ||| | ||| Sbjct 17005 GTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGT 17064 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 ||| || || | |||||||| ||||| ||||| || ||||||| || || ||||| Sbjct 17065 GAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGG 17124 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 ||| | || | || ||||||| ||||| || | || | |||| |||| |||| Sbjct 17125 CGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCGGCCCA 17184 Query 145231 ATCCCATAGC---GAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCT 145287 ||||| || || |||||| | ||| |||||||||||||||| || ||||||| ||| Sbjct 17185 GTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCCCTTGCT 17244 Query 145288 GGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAAC-TCG 145346 |||| ||| | || ||| ||| || |||||||| || | | Sbjct 17245 CACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTC-CATCGAGG 17303 Query 145347 CCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGC-AGCATCGCTTCA 145405 |||||| |||||||| || | |||||| || | | |||||||| || | || || Sbjct 17304 CCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGT-GCCTCG 17362 Query 145406 TCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACG 145465 |||||||| ||| || || || | || || || ||||| ||||| | || | | Sbjct 17363 TCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATG 17422 Query 145466 CCGATGGGCCGATGTTTCATGTTGCTCATC-CTCGCCGACTC---GATAGGATATCGATT 145521 ||||| || || || || |||||| || |||| | ||| ||| || || || Sbjct 17423 CCGATCGGGCGGTGGCGCAGGTTGCT--TCGCTCG--GCCTCGGGGATCGGGTAGTAGTT 17478 Query 145522 ACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTC 145581 |||||| | || || | ||| ||| || ||||| || |||| || ||| | Sbjct 17479 GATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTTCTT 17538 Query 145582 AAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGAC--GGCGATCGACGCCAAA 145639 ||||| || | || ||| || |||| | || | ||| ||||| ||||| | Sbjct 17539 GAAGTCGAA---GGTCTTGTCGTCGTTCACA-AACT-TGGACAGCGCGATGGACGCGAGG 17593 Query 145640 TTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCT 145698 || || || || ||| || |||| || |||| | | | |||| ||| | ||||| Sbjct 17594 TTGCACACCGCGACCTCGTCGGGCGACG-TGTACTCGAGCACCTCGCAGCAGAGGTTGCT 17652 Query 145699 ACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAG 145758 | ||| || || || || ||||| || || | ||| |||| ||||||||| || Sbjct 17653 CGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACACGAGTCCTTGTACAG 17712 Query 145759 CATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTG 145815 ||||||||| ||| ||||| | ||||| ||| | ||| || | | || | ||| Sbjct 17713 CATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGC---TGCTG 17769 Query 145816 CGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAA 145875 ||| || | | || | ||||||||| ||||| | ||| ||| |||| || Sbjct 17770 CGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAA 17829 Query 145876 CGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATAC 145935 | || ||| | | | || || || || ||| || || | ||| ||| | Sbjct 17830 CTCGTCACCCCACGTCGTGTAGAGACCCGGTGCCTCGTTCGGGCAGAACAGGCTCCACTC 17889 Query 145936 GCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT- 145994 ||||||||| | ||||||| ||| || | ||| || | ||||| |||||| | || | Sbjct 17890 GCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAACAGATC 17949 Query 145995 -CGCGCGCTTTGCAATCCTCAGCACCCATGTTTC-GCTTCAAATTAAGCACACT-ATAGA 146051 || |||| |||| ||| | || || ||| ||| | | || | ||| ||| Sbjct 17950 ACGAGCGCGGTGCA--GCTC-GTTGCCGTGGTTCTTCTTGAGGTCGAGGA-ACTCGAAGA 18005 Query 146052 TGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCT 146108 |||| ||||||||||| || | ||| | |||| | || || || || |||||||| Sbjct 18006 TGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCT 18065 Query 146109 GGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTA 146168 | ||||| | ||| || ||| ||| || ||||||| ||||||| ||| |||| | | Sbjct 18066 GATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACG 18125 Query 146169 CGCCGTTCGT--AGAGTTTATTCTGGT--GCCGCGGGAGCGCACGCAATGAACATTCACG 146224 ||||||||| | | | | || | ||| ||| | | || || | || Sbjct 18126 AGCCGTTCGTGCCACGGATGTACGAGTTGGTCGC----GCGGATGTTGTGCACGCTGACA 18181 Query 146225 CCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCG 146284 || | |||||| | ||||||| || |||||| | |||||| || |||||||| Sbjct 18182 CCAATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCC 18241 Query 146285 TCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCG 146342 || || ||| |||| ||| ||||||| |||||||| ||| ||||| ||||| Sbjct 18242 TCGATCGAGTCGTCCTTC--ATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCG 18299 Query 146343 TCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGAT 146402 | || || ||||| |||||| |||||||||| || | || | ||| | | Sbjct 18300 TGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGT 18359 Query 146403 ACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCA 146462 |||| |||| ||| | | ||||| | || ||||| | ||||||||||| | || Sbjct 18360 ACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCA 18419 Query 146463 TGTGTTGGGGCCGCTCCGCCAC 146484 | || || || ||||| || || Sbjct 18420 TCTGCTGCGGGCGCTCAGCGAC 18441 >seq3662 Length=2004 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | ||||||||||| || |||||||| || Sbjct 232 CCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 173 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||| ||||||||| Sbjct 172 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGG 113 Query 131128 ATTCCT 131133 |||||| Sbjct 112 ATTCCT 107 >seq45 Length=43062 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACA---GCAGCACC 46140 || || || |||| ||||| || |||||||| | |||||| | || || || || Sbjct 41611 ATCCCTTGTGTGCAGAAGAAGGCCCACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCGCC 41670 Query 46141 GCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGC 46200 ||| |||||||||||||| || || || || || |||||| |||| || || ||| Sbjct 41671 GCG---TTCGCCGAGCGTATCGTCGCGTTCGCTGCCGTCGAGGGCATCTTCTTCTCGGGC 41727 Query 46201 -AGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAG 46259 ||| || | | ||||| | |||| | ||| | ||||| ||||| | || Sbjct 41728 TCGTTCTG-CTCTATCTTCTGGCTCAAGAAGCGCGGCCTTATGCCTGGCCTCAGCTTCTC 41786 Query 46260 CAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 |||||||| || ||||| |||||||| || || ||||| ||||| || Sbjct 41787 GAACGAGCTCATCTCGCGTGACGAGGGTCTCCACTGCGACTTCGCGTGCCT 41837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471947402626560