Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq466 104 3e-17 seq44 102 1e-16 seq440 89.7 6e-13 seq1775 84.2 3e-11 >seq466 Length=14624 Score = 104 bits (114), Expect = 3e-17 Identities = 178/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || || ||||||| ||| || || ||||| || ||||| | |||||||| ||| Sbjct 11825 ATCTTCATCGGTCCGACGTTCTACCAGCGTCTCAAGCATATGGTCGACGACAAGATCCAC 11884 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| ||| | ||||||| ||| |||||||||| ||||| ||| | Sbjct 11885 TCGCGCTCGCGCGGCCCCGTGACGATGCTGACGCGCCAGCCCATGGAGGGTCGTGCGCGA 11944 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | ||||| || || | ||||||||||| ||||| |||| | ||||||| | Sbjct 11945 GAAGGTGGTCTGCGTATGGGAGAGATGGAGCGCGACTG---TCTGATCTCGCACGGCTCG 12001 Query 15575 ACCCAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGC 15634 || | ||||||| || ||| |||| |||| ||| ||| | | |||||||| Sbjct 12002 GCCAACTTCCTCATGGACCGCCTGTTCGCCAACTCGGACGCGTATCGCGTGCACGTGTGC 12061 Query 15635 AAAGACTGCGGCATGAT 15651 | ||||||||| || Sbjct 12062 GACATCTGCGGCATCAT 12078 >seq44 Length=43120 Score = 102 bits (112), Expect = 1e-16 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 126181 GTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTGA 126240 ||| | || ||||| ||| ||| | |||||||| |||| || |||||||||||||| Sbjct 26471 GTGAAGATATAGCGCGGACTTGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGT 26530 Query 126241 CCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGACA 126300 || ||| | || ||| ||| ||||| || || ||| |||||||||| | |||||| Sbjct 26531 CCCGACGGATACAGCAATGGCAGGTTGTTAGCACCGACATAGTCCTGCGCCATGTTGACA 26590 Query 126301 ATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCAC-GTAGCC 126359 || ||| | ||| | ||||||||| | ||| | || ||||| || || ||| || Sbjct 26591 ATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCTC-GCTACAGTAACC 26649 Query 126360 GCTCAGCTGCGCAACCTTGA 126379 |||||||| ||||||| Sbjct 26650 AGCGAGCTGCGCGACCTTGA 26669 >seq440 Length=14964 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 126187 ATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTGACCGTCC 126246 ||||| || || | ||| | ||| || || ||| | | || || ||||||||||||| Sbjct 2765 ATGTAACGAGGCGATGCTGCATCTTTACCACCCGCTAGTCGAGTACCAAACTGACCGTTT 2706 Query 126247 GGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGACAATGGTC 126306 || ||||| || | |||||| ||||||||| || || || | |||| ||| || Sbjct 2705 GGAGACAACAGATGGATGTTGTTGCTTCCCACAAAATCTTGGGCCATGTTGATAATCGTG 2646 Query 126307 TCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCGCTCAGC 126366 || || |||| || ||||| | ||| | | ||||||| |||||| || | ||| Sbjct 2645 CCGTTGAGACTCTGTTCACCGTGGTGGTACGCAGAATGCTCGGACACGTATCCACCAAGC 2586 Query 126367 TGCGCAACCTTGAT 126380 || |||||||| || Sbjct 2585 TGAGCAACCTTAAT 2572 >seq1775 Length=5132 Score = 84.2 bits (92), Expect = 3e-11 Identities = 199/292 (68%), Gaps = 14/292 (5%) Strand=Plus/Minus Query 15365 TCGGGCTTTACCGGCGAAAGGATCCAAAGCACCATATTTATGGGACCGACGTACTATCAC 15424 |||||| | || |||||| ||||| || ||| |||||||| |||| ||||| || Sbjct 737 TCGGGCATCACGGGCGAACCGATCCTGTGCTACATCTTTATGGGCCCGATCTACTACCAG 678 Query 15425 CGACTCAAACACATGGTAAAGGACAAGATGCACGCGCGATCGCACGGACAG-GTGACGAC 15483 ||||| |||||||| | ||||||||||||||| || | | || | | | | || Sbjct 677 AAGCTCAAGCACATGGTCATGGACAAGATGCACGCTCGTGCTCGAGGCCCGCGCGCCG-T 619 Query 15484 GCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGCGGTGGCCTCCGCTTTGGAGAGAT 15543 |||| || ||||| | | || || |||| | ||| ||||| || | || ||||| Sbjct 618 GCTCACGCGACAGCCGACCGAGGGCCGCTCGCGCGACGGCGGCCTGCGTCTCGGCGAGAT 559 Query 15544 GGAAAAGGACTGCATTCTGGT--GC-ACGGCGCCACCCAATTCCTCAACGAGCG---CAT 15597 ||| ||||| |||| | || ||||||| | | | |||| ||||| ||| Sbjct 558 GGAGCGCGACTG---TCTGATCGGCTACGGCGCGAGCATGCTGCTCATGGAGCGTCTCAT 502 Query 15598 GTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGCAAAGACTGCGGCATG 15649 | |||| |||||| ||||| | ||||||||| | | |||| ||||| Sbjct 501 G-ATCTC--GAGTGACGCGTTCACGGCCGACGTGTGCCAGGGCTGCCGCATG 453 Score = 82.4 bits (90), Expect = 9e-11 Identities = 128/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 15020 GTAAAGGTTGTCATTGGCCAGATGCGCACGCCCGAGATTGGCGACAAGTTTTGCTCT-GG 15078 || ||||| |||| |||||| ||| ||||||||| ||||||||||| || | | Sbjct 1082 GTCAAGGTGCTCATCCGCCAGACGCGTCGGCCCGAGATCGGCGACAAGTTCAGCAGTCGC 1023 Query 15079 TATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCCCCAGGAAGACATGCCCTTTACCG- 15137 | ||| || |||||| |||||||| ||| | |||||| |||||||| || | || Sbjct 1022 CACGGC-CAGAAGGGCGTGTGCGGCACGATCCGCAACCAGGAGGACATGCCGTTCAACGA 964 Query 15138 CGTCAGGCATGACGCCCGACATTATCATCAACCCCAACTGCATCCCGTCCCGCATGAC 15195 || | ||| || || ||| | ||||| ||||| || | ||||| ||||||||| Sbjct 963 CGAC-GGCGTGTGCCCGGACCTGATCATGAACCCGCACGGTTTCCCGAGCCGCATGAC 907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611307291638400