Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq238 188 1e-42 seq45 149 1e-30 seq440 131 3e-25 >seq238 Length=20387 Score = 188 bits (208), Expect = 1e-42 Identities = 451/673 (67%), Gaps = 18/673 (3%) Strand=Plus/Minus Query 279691 TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTC 279750 |||| || ||| | || || |||||||||||||||||||| | | | || ||||| | Sbjct 7699 TGCCTGTCGGTGCCCTCTCTGGTGGTTGGAAGATGAAGCTCGAGTTGGCCCGTGCCATGC 7640 Query 279751 TACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACG 279810 | || || ||| |||| || ||||||||||| || |||||| |||| ||||| Sbjct 7639 TCATGAAGGCTGATATCCTCCTTCTTGATGAGCCGACGAACCACTTGGATGTGCACAACG 7580 Query 279811 TAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 | ||||| | | |||||| || || || | ||| || | || ||||| || || | Sbjct 7579 TCAAGTGGCTCGAGGACTACCTCACGAGCCTCACGAACGTGACGTCGCTCATCGTGTCGC 7520 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 |||||||||| ||||| || | || ||| | |||||| ||||| ||| || | | Sbjct 7519 ACGACTCTGGTTTCCTCGACACGGTCTGCACGAACATCATCCACTACGAG---AACCGTA 7463 Query 279931 AGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGC 279988 ||||| | | ||| || ||||| || | ||||| ||| || || ||||| Sbjct 7462 AGCTCAAGACGTACAAGGGTAACCTCTCCGAGTTCGT--CAAGCAGAAGCCGGAGGCCAA 7405 Query 279989 CGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCT 280048 | ||||| || || ||| ||| || ||||| ||||||||||| || || || Sbjct 7404 GACGTACTACGAGCTTGAGGCCGCTGCCTTCAAGTTCACGTTCCCTGAGCCGGGTTTCCT 7345 Query 280049 GGAGGGCATCAC-ATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTT 280107 | | |||| | ||| || || | ||||| ||| | ||| | | Sbjct 7344 TGCTGATATCAAGAACAAGGGTAAGC-CGATCATTCGTCTCACGAACTGCTCGTACCAGT 7286 Query 280108 ATCCCAATGGCCCCAACAT--CTTC-AGCAGTG---TCAACTCGCAGGTTTCTATGAACT 280161 | || ||||| | ||| | || | | ||| ||||| | | ||| || || Sbjct 7285 ACCC---TGGCCGCGACAAGCCGTCGATCCGTGACATCAACGTGACGTGTTCGCTGGCCT 7229 Query 280162 CACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGA 280221 | || |||| || || || || || ||||| |||||||| || || ||||| | |||| Sbjct 7228 CGCGTATTGCCGTTATCGGCCCGAACGGTGCCGGTAAGTCGACGCTCATCAAGATGCTGA 7169 Query 280222 CTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTT 280281 | || ||| | || | || | || | || |||||||| || |||||| | || | Sbjct 7168 CGGGTGAGGTCGAGCCTACGGTCGGTACGGTGTGGAAGCACCCGGCCATGCGTTTCGCCT 7109 Query 280282 ACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAAT 280341 |||| || |||||||||||||||||||| ||| | ||||| ||||| || | ||||| | Sbjct 7108 ACGTTGCCCAGCACGCTTTCCACCACATTGAGGAGCACCTCGACATTACGGCCAACCAGT 7049 Query 280342 ACATTCAGTGGCG 280354 |||| |||||||| Sbjct 7048 ACATCCAGTGGCG 7036 Score = 114 bits (126), Expect = 3e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 |||||| || |||| || ||||||||||| || ||||| | ||||||||| ||| | Sbjct 8037 GGATCTCTGCAACTGCGAGTTCTCGCTCGCGTACGGTGGTATGATTCTGCTGAACAACGC 7978 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| ||| | ||||||||||| |||| || |||||| ||| || || || ||||| Sbjct 7977 CCGTCTCCGCCTCAAGCGTGGCCACCGCTACGGTCTCTGCGGCCCGAACGGTTGCGGTAA 7918 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA-TCTG 279528 | || || ||||||||||| | ||||| ||||| | ||| ||||| || || || Sbjct 7917 GTCGACGCTTATGCGCGCCATCTCGAACGGCCAGCTCG-AGGGTTTCCCGACCCAGGATG 7859 Query 279529 AGGTAAGGACAGTGTATGTAGAGCACGACATC 279560 || | | ||| || | || |||||| || || Sbjct 7858 AGCTCAAGACGGTCTTCGTCGAGCACAACCTC 7827 >seq45 Length=43062 Score = 149 bits (164), Expect = 1e-30 Identities = 532/822 (65%), Gaps = 20/822 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | ||||| |||| || ||||| | Sbjct 42101 TCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATCCAGTCAAACGGGTTCGAC 42042 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | |||||| || || || ||| || || ||||| | Sbjct 42041 ACCTTGTAGATCTTGGCAACGCCAAGCGCGTGGAGGAGGCGATCGGCGCAGAACTCAATG 41982 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGAT 251741 ||||| | ||| || |||||||| || || | | || ||| | || || Sbjct 41981 TACTGGCACATGAGAGACGAGTTCATACCGATGAGCTCCACCGGGAGC-GAGTCCTGGAC 41923 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| ||||| ||| | || || || || | || | | | | | | || || Sbjct 41922 GAACTCCTTCTCGATCGCGACGGCATCGCGAATGATCTCGTGGATGCGAGACTCAGGGAG 41863 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTG--GTGCAGACCCTCGTC 251858 |||||| | ||||| |||||||| || | ||| || || | ||| ||||||||||| Sbjct 41862 CTTGTTGGCGAGCTTGGAGTACAGCAGGCACGCGAA---GTCGCAGTGGAGACCCTCGTC 41806 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 || ||||| |||||| || | | ||||||||||| | || || ||| ||||||| Sbjct 41805 ACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATAAGGCCGCGCTTCTTGAGCCA 41746 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | ||| || || || ||||| | | |||||||| | | || || | Sbjct 41745 GAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCAGCGAACGCGACGAT 41686 Query 251979 GCGCTCAGCAAACGACTTGTCCTGCGA---CAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 ||||| || |||| | |||| | |||| | ||||| |||||||| Sbjct 41685 ACGCTCGGCGAACGCGGCGCGGCGCGAGTCGCACCACTTGAGCGCCCAGTGGGCCTTCTT 41626 Query 252036 TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095 || ||||| || ||||| || || || |||| ||||| | ||||| Sbjct 41625 CTGCACACAAGGGATCGTCTCGATGGCGCGAAGAAGGTGGTTCTTCTCGGTCTGGTCCTT 41566 Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTG 252155 |||| || || | || || ||||||| |||||| |||||| || | ||||| Sbjct 41565 GATGTACGTGTCGATGAGCAGCGAGTACACCTCCGAGTGGATGTTCTCAATCGCAATCTG 41506 Query 252156 GTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAAT 252215 | | | ||||| |||||| ||| | || || || |||||| | || | Sbjct 41505 GAAGCCGTAGAAGCAACGCGCCTCAGGAACCTGCACCTCGCTGCTAAAGTTCATCGCGAG 41446 Query 252216 GTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTG 252275 |||||| | || |||||||| ||| | || ||||| | || | | |||||| |||| Sbjct 41445 GTTCTCGTTGACGATGCCATCACTGGCCGCGAAGAACGCGAGCACGTGCTTGATAAAGTA 41386 Query 252276 ACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCA-GAGG--AAC 252332 ||||| | ||| |||| |||| |||||| | ||| || || |||| || Sbjct 41385 GCGCTCGTTGTCCGTGAGGTTGT---TCCAGTCCTTGAGGTCGTG---CACGAGGTCAAT 41332 Query 252333 TTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 ||||| |||||||||| | | | | |||||||||||||| Sbjct 41331 CTCTTCAGCCGTCCAGAAGCTCGCCTCAGCCTTCTTGTACAT 41290 >seq440 Length=14964 Score = 131 bits (144), Expect = 3e-25 Identities = 245/359 (68%), Gaps = 1/359 (0%) Strand=Plus/Plus Query 218650 GAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGT 218709 ||||||||||| |||||| || ||| || || ||||| ||||| ||||| |||||| Sbjct 2569 GAAATTAAGGTTGCTCAGCTTGGTGGATACGTGTCCGAGCATTCTGCGTACCACCACGGT 2628 Query 218710 GAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAAC 218769 || |||||||| | || | ||| | |||||| || || | |||||| || |||||| Sbjct 2629 GAACAGAGTCTCAACGGCACGATTATCAACATGGCCCAAGATTTTGTGGGAAGCAACAAC 2688 Query 218770 ATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGT 218829 || | || || || ||||||||||||||| |||| ||| |||||| || ||| Sbjct 2689 ATCCATCTGTTGTCTCCAAACGGTCAGTTTGGTACTCGACTAGCGGGTGGTAAAGATGCA 2748 Query 218830 GCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAG 218889 || || | | || |||||||| || | || | || || | | ||| | | Sbjct 2749 GCATCGCCTCGTTACATCTTTACGAACCTCGAGCAACTCACACGACGCATCTTCGACCCT 2808 Query 218890 GCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGG 218949 ||| | | | | | ||||| || || ||||| ||||||||||| || ||| Sbjct 2809 CTGGATAACGACAACTTGACATATCTCGACGATGATGGACAGTCGATTGAGCCTGAATGG 2868 Query 218950 TATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTT 219008 ||||| || ||||| | ||||| ||||||| | | |||||||| || ||||| Sbjct 2869 TATGTTCCGATCATTCCAATGGCACTCGTCAATGGTGGCGAGGGTATCGGCAC-GGGTT 2926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027690833041644