Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq217 473 2e-128 seq45 342 1e-88 >seq217 Length=20966 Score = 473 bits (524), Expect = 2e-128 Identities = 1181/1765 (67%), Gaps = 55/1765 (3%) Strand=Plus/Plus Query 244070 AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGG 244129 ||| ||| | ||||| | ||||||| | | ||||| || | ||||||||||| | | Sbjct 16991 AGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTG 17050 Query 244130 TAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTC 244189 || | |||| | ||| ||||||||| ||| ||||||| || |||||||| || | Sbjct 17051 TACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGAC 17110 Query 244190 GCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGT 244249 || |||||||| |||| | |||||| ||| | |||||||| | | || || | Sbjct 17111 GCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCC 17170 Query 244250 CTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCA 244309 ||||| || ||||||||| | ||| || ||| || ||| |||||||||||| Sbjct 17171 TTGAGCGCGGCCCAGTCCCAGAGGCCGGAC--GTCGGCG----TGACGCCCCACATGTCG 17224 Query 244310 AACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGC 244369 |||| | | |||||||| ||||| |||||||||| | | ||| || |||| | Sbjct 17225 TACTGGAAGATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCC 17284 Query 244370 TGGGCCAGCTTACAGCTCT-CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT 244428 | || |||| || | | || | ||| || |||| | ||||||||||| |||| Sbjct 17285 TTCGCGAGCTC-CATCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTT 17343 Query 244429 GTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGC 244488 ||| | ||||| |||| | ||| || | | |||||| | ||||| |||| || Sbjct 17344 GTTGAGCTCGCGTGCCTCGTCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCGTCCGC 17403 Query 244489 CAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGG 244548 || |||||||||||||||||||| || | ||| ||| |||| ||| ||| ||||| Sbjct 17404 GAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCTCGGCCTCGGG 17463 Query 244549 CACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGAC 244608 | ||||| ||||| |||||| ||||||||||||||||| |||| | | || Sbjct 17464 GATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGAT 17523 Query 244609 GTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAA 244668 |||| |||| || |||||| | || || | || | || ||||||| Sbjct 17524 GTCGTACAGCTTCTTGAAGTCGAAG--GT-------CTTGTCG-TCGT-----TCACAAA 17568 Query 244669 CTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTG 244728 || | || |||| | || |||||||| || || ||||| || | ||||||| Sbjct 17569 CTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACGTGTACTC 17628 Query 244729 GACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTT 244788 || | |||| ||||||||| || | ||| ||||| |||| ||| || || ||||| Sbjct 17629 GAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTT 17688 Query 244789 GGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAG 244848 | ||| || | ||||||||| |||||| | ||| || ||||||| ||| | |||| Sbjct 17689 GCGGTTACACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAG 17748 Query 244849 GA-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGT 244907 || ||| | |||||| | | || || |||| |||| || |||||| ||||| Sbjct 17749 GATCGC-GAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGT 17807 Query 244908 AGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAG-GCCGGGGCACGAC 244966 | || |||||| |||||||||||| |||| || |||| ||| | | || | | Sbjct 17808 ACTGGTGGTACAGCGCCTCGAACTCGTCACCCC--ACGTCGTGTAGAGACCCGGTGCCTC 17865 Query 244967 G-CCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGG 245025 | |||||| | || |||||||||||| | ||| || | || ||||||||| ||||| Sbjct 17866 GTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGG 17925 Query 245026 GATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCT 245085 ||||| | || | ||| || || | | | ||| || ||| ||||||| | Sbjct 17926 AATCCACATCGCGTAGAACAGATCACGAGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTT 17985 Query 245086 CAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCC 245145 || || | || || |||| |||| ||||||| ||||| | || | |||| | ||| Sbjct 17986 GAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCC 18045 Query 245146 GGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGT 245205 |||||| ||| ||||| ||||| | | | ||||||| | |||||| | Sbjct 18046 CTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCAT 18105 Query 245206 AGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAG 245265 ||||| | |||||| || |||||| ||||| |||||| | | | | | || Sbjct 18106 GGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCACGGATGTACGAGTTGGTCGCGCGGAT 18165 Query 245266 GTTGCTGATG--GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTG 245323 |||| | | |||| || | |||||||| |||||||||| |||||| |||| Sbjct 18166 GTTGTGCACGCTGACA--CCAATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTG 18223 Query 245324 ATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGAC 245383 | ||||| |||||||| || ||| ||||||| |||||| ||||| || ||| Sbjct 18224 AGCGTGTCATAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGAC 18283 Query 245384 AGCTG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCG 245442 ||||| |||| || | ||| | ||||||||| || || | ||||| || ||| ||| Sbjct 18284 AGCTGCGGGCGCGGCG-TGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCT 18342 Query 245443 GCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT--CTGC 245500 ||| | | || ||||||||| |||| |||||||||| | |||||| | | Sbjct 18343 TTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGAC 18402 Query 245501 AG-GGCGCACCTCATGAGGGTGTGCTG-GGGCG-TC-TCGATGGGTCCCTCGGGTCCCTT 245556 || | ||| | || | | ||||| ||||| || ||| || || | | Sbjct 18403 AGCGACGCGCAGAATCA---TCTGCTGCGGGCGCTCAGCGACCTTGCCACCGACGCGC-- 18457 Query 245557 GAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTG 245616 || | ||| || ||||||||||||||| |||||||| ||| |||||||| || Sbjct 18458 -AGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCGGTC 18516 Query 245617 GTGCCTGACGGCTGCGTCGAGTCTCTCGGCGTGCTTC-TGACTGACCTCGTAAAACTTTT 245675 ||| ||| || | || ||| | || ||||| | ||| ||| || ||| | | | Sbjct 18517 GTGGATGATCGCCGAGTTGAGGCGGTCCTTGTGCTCCATGA-TGATCTGGTAGACGTCCT 18575 Query 245676 GCGCTATGAGGGGAGCCCTGAGCCCGG---TGTCCGGATTGACGTTGAACCAGAGCCTCT 245732 ||| || || || ||| || |||| | || | ||| | | | ||||| Sbjct 18576 CCGCGATCAGCGGCGCCGGCAGTCCGGTCTTCTCGTGCTTGTTCTGGTAGAAGAGCTCAA 18635 Query 245733 TGCACACCTCCGAGAACTTGGGGCTGGTGAGCTTATGCAGGTTGGTGACTGCTATGCGCG 245792 || |||||||||| | ||||| ||| |||||||| | || | ||||||| Sbjct 18636 TG---TTCTCCGAGAACAGCTTGTTGGTGTTCTTGTGCAGGTTCGAGATCGAGATGCGCG 18692 Query 245793 CCGCCAACTTGCTGTAGTCGGGGTG 245817 |||| | |||||| |||||||||| Sbjct 18693 CCGCGAGCTTGCTAAAGTCGGGGTG 18717 >seq45 Length=43062 Score = 342 bits (378), Expect = 1e-88 Identities = 586/846 (69%), Gaps = 11/846 (1%) Strand=Plus/Plus Query 42301 TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGG 42360 ||||| |||||||||||||| || | |||||| || || ||||||||||| | Sbjct 41282 TCTGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGGACGGCTGAAGAGATTGACCTCG 41341 Query 42361 CCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACA 42420 | ||| | |||| | || | || ||||| | || |||| || Sbjct 41342 TGCACGACCTCAAGGACTGGAACAACCTCACGGACAACGAGCGCTACTTTATCAAGCACG 41401 Query 42421 TACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCA 42480 | || || |||||||| ||| ||| ||||| ||||| |||||||| || | | || | Sbjct 41402 TGCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCGCGATGAACTTTA 41461 Query 42481 TGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 | ||||||||| ||||||||| |||||||||||||||||||| || || |||| Sbjct 41462 GCAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCGATTGAGA 41521 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCG 42597 || | ||||| ||||||||| | ||||||| ||||||||||| ||| | || Sbjct 41522 ACATCCACTCGGAGGTGTACTCG---CTGCTCATCGACACGTACATCAAGGACCAGACCG 41578 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 || ||| || | ||||| |||||||| || || | |||||||||| ||| Sbjct 41579 AGAAGAACCACCTTCTTCGCGCCATCGAGACGATCCCTTGTGTGCAGAAGAAGGCCCACT 41638 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||||||||| ||| ||| | | ||| |||||| |||| | | || || || Sbjct 41639 GGGCGCTCAAGTGGTGCGACTCGCGCCGCGCCGCGTTCGCCGAGCGTATCGTCGCGTTCG 41698 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 | ||||||||||||||||||||||||||| | ||| ||| ||||||||||||||| || Sbjct 41699 CTGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCTATCTTCTGGCTCAAGAAGC 41758 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 | ||||| || |||| |||||||||||| |||||| | |||||||| || | Sbjct 41759 GCGGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACGAGGGTCTCC 41818 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 | | ||||| || ||||| |||| ||| | | ||| |||||| | | || | Sbjct 41819 ACTGCGACTTCGCGTGCCTGCTGTACTC---CAAGCTCGCCAACAAGCTCCCTGAGTCTC 41875 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC 42957 | ||| | ||||| || ||||| | |||||||||||||||| || | | |||| Sbjct 41876 GCATCCACGAGATCATTCGCGATGCCGTCGCGATCGAGAAGGAGTTCGTCCAGGACTCGC 41935 Query 42958 TGCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAGTACGTC 43016 | || ||| || |||| ||||| | || | ||||||||| ||||||| ||| | | Sbjct 41936 TCCCGGTGGAGCTCATCGGTATGAA-CTCGTCTCTCATGTGCCAGTACATTGAGTTCTGC 41994 Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 ||||| | ||||| | | | || | | ||||||| | || ||| || Sbjct 41995 GCCGATCGCCTCCTCCACGCGCTTGGCGTTGCCAAGATCTACAAGGTGTCGAACCCGTTT 42054 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| ||||| | |||||| | |||||||||||||||| |||||||||||||| | | Sbjct 42055 GACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGC 42114 Query 43137 GACTAC 43142 || ||| Sbjct 42115 GAGTAC 42120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944208361803840