Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq217 385 5e-102 >seq217 Length=20966 Score = 385 bits (426), Expect = 5e-102 Identities = 1021/1538 (66%), Gaps = 66/1538 (4%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||| ||||||| |||||| || || ||||||||||||||||| | | ||||| | Sbjct 18501 TACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCTCCTGCGCGTCGGTGGCAAG 18442 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || | ||||| ||||| ||| || | |||||||||| |||| || ||| || ||| Sbjct 18441 GTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCACAAGCATGAC 18382 Query 93838 AT----GCCGAATGTTTTGCGGGCTTTCAGAG-ACATGCGGGACAAGAGGTATACCATG- 93891 || |||| | | || | | ||| ||||| | ||| || | || | Sbjct 18381 ATCGACGCCGC--GCT---CGAGACGTACGAGTACATGTCG--CAA-AGCTTCTTCACGC 18330 Query 93892 --GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCC 93949 || || ||||| ||||||||||| || || ||| || ||| |||| ||||| |||| Sbjct 18329 ACGCGACGCCGACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCC 18270 Query 93950 TGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009 || | | | |||| |||||| ||| || || | |||| |||||| | || || Sbjct 18269 TGCTCGCCATGAAGGACGACTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCCT 18210 Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069 |||||| || | || || || || || |||| || ||| || | || || | | Sbjct 18209 GCATCTCCAAGTGGGCCGGCGGCATTGGTGTCAGCGTGCACAACATCCGCGCGACCAACT 18150 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 | |||||||| || || || ||| | || ||||||||||| || ||||| || || |||| Sbjct 18149 CGTACATCCGTGGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCA 18090 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 || || ||||||| || ||||| |||||||| || | | | ||||| || |||||| | | Sbjct 18089 ACGACACGGCGCGTTATGTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGT 18030 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 |||||||||| |||||||| ||| | | ||| ||||||| ||||||||||||| Sbjct 18029 ATCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCA 17970 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 |||| ||| | | || | || || |||||||| | ||| | || || || || |||| Sbjct 17969 ACGAGCTGCACCGCGCTCGTGATCTGTTCTACGCGATGTGGATTCCCGATCTCTTCATGA 17910 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | ||||| ||| ||| || ||||| || || || || || || || || || | Sbjct 17909 AGCGCGTTGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCACCGGGTCTCT 17850 Query 94370 --CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCA 94426 |||||| | || || | || || | |||| | |||| | ||| ||||| Sbjct 17849 ACACGACGTGGGGTGA-CGAG-TTCGAGGCGCTGTACCACCAGTACG-AGCGCGAGGGCC 17793 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 || | ||| || || | |||| ||| |||| | || ||| | | Sbjct 17792 GCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCG 17733 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTC-TGTCAACGCCAAGTCCAACCAGCAG 94545 ||||||| ||||| ||||| ||| ||||||||| ||| ||| |||||| ||||||||| Sbjct 17732 AGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGT-AACCGCAAGTCGAACCAGCAG 17674 Query 94546 CACCTCGGGGTGATCAAGAGCTCG---AATCTGTGCACCGAGATTGTCGAGTATACTTCT 94602 ||||||| |||| ||||| || || ||| |||| | ||||||| || || Sbjct 17673 AACCTCGGCACGATC---CGCTCGAGCAACCTCTGCTGCGAGGTGCTCGAGTACACGTCG 17617 Query 94603 CCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGAT 94662 || |||||| | || ||||| ||||| | |||||| ||||||| || ||| | Sbjct 17616 CCCGACGAGGTCGCGGTGTGCAACCTCGCGTCCATCGCGCTGTCCAAGTTTGTG---AAC 17560 Query 94663 GCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATG 94722 | | ||| | | ||||| | || |||| || || | |||| | Sbjct 17559 GACGACAAG---------ACCTTCGACTTCAAGAAGCTGTACGACATCAC--CAAGG-TC 17512 Query 94723 GTCTTG---AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAG 94779 ||| | ||||| |||| ||| ||||||| |||| |||||| |||| ||||| ||| Sbjct 17511 GTCACGCGCAACCTCAACAAGGTCATCGACATCAACTACTACCCGATCCCCGAGGCCGAG 17452 Query 94780 AACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTG 94839 |||||| || || || |||||||||||||| |||||| ||||||||||| | Sbjct 17451 CGAAGCAACCTGCGCCACCGCCCGATCGGCATCGGCGTGCAGGGTCTCGCGGACGCGTTC 17392 Query 94840 GTGATGATGCGTCTGCCCTACGACTCTG---TCGACGCGGC---GGGTTTGAATTTGAAC 94893 | | ||| | ||||| | || ||||| ||| | | || |||| Sbjct 17391 ATCCTCATGGG------CTACGCGTTTGAGAGCGACGAGGCACGCGAGCTCAACAAGAAC 17338 Query 94894 ATATTCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGAC 94953 || ||||| | | || | ||| || ||| | || | | | || | ||| Sbjct 17337 ATCTTCGAGACGCTGTACTTCGGCGCGATGGAGGCCTCGATGGAGCTCGCGA---AGGAG 17281 Query 94954 GGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGAC 95013 ||| || ||| | | || || ||| || ||||||| || |||| |||| Sbjct 17280 CACGGCCCGTACGCCAGCTACGAGGGCTCACCCGTGAGCAAGGGCATCTTCCAGTACGAC 17221 Query 95014 CTCTGGGGTGTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTT 95070 | ||||| || | || | || || || | ||||||| || || || || Sbjct 17220 ATGTGGGGCGTCACGCCGACGTCCGGCCTCTGGGACTGGGCCGCGCTCAAGGCCAGCGTC 17161 Query 95071 ATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCG 95130 | |||| ||| ||| ||||||| | || || ||||| ||||| || || ||| Sbjct 17160 GCGCAGTACGGCGTGCGCAACTCGCTGCTGCTCGCGCCGATGCCGACGGCGTCGACCGCG 17101 Query 95131 CAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGG 95190 |||||||| ||||||||||||||| |||| || ||||| ||||| |||||||| | || Sbjct 17100 CAGATCCTCGGCAACAACGAGTCGATCGAGCCGTTCACGACCAACATGTACAACCGCCGC 17041 Query 95191 GTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCT 95228 ||||| || || || ||| | || | |||||| |||| Sbjct 17040 GTGCTTGCAGGCGAGTTCACGATCGTGAACAAGTACCT 17003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494654656100640