Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq217 266 3e-66 seq45 159 3e-34 >seq217 Length=20966 Score = 266 bits (294), Expect = 3e-66 Identities = 958/1470 (65%), Gaps = 35/1470 (2%) Strand=Plus/Plus Query 153006 ATGAGGTCATCGATCAAGTACTGGTTGACCA-CTTGAAACTCGCCCGCCAACACTCGTCT 153064 ||||| || | |||| ||||| ||| || | | |||| |||||| || | ||| || | Sbjct 16988 ATGAGCTCCTTCATCAGGTACTTGTTCACGATCGTGAA-CTCGCCTGCAAGCACGCGGCG 17046 Query 153065 CAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGT 153124 || | ||| | ||||| || || | || ||||| ||||| || || || || || Sbjct 17047 GTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGT 17106 Query 153125 GGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGT 153183 | || |||||||| ||| | || || || || |||| ||||| | || ||| | Sbjct 17107 CGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCT 17166 Query 153184 CGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCG---CGTTCCACATGTCGT 153240 | |||| | ||| ||| ||||| || | |||| | || || ||||||||||| Sbjct 17167 GG-CCTTGAGCGCGGCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGT 17225 Query 153241 ACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGT-CGCGT 153299 |||| || | || || |||| ||| | | | ||| ||||| | | | Sbjct 17226 ACTGGAAGATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCT 17285 Query 153300 TGGGCCAGTTCGCAGCTAG-CCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTT 153358 | | | || || || | || |||| | |||||| |||| | || ||| ||| | || Sbjct 17286 TCG-CGAGCTC-CATCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTT 17343 Query 153359 ATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGC 153418 ||||| || || || |||||||| ||| || || || | || ||||| || Sbjct 17344 GTTGAGCTCGCGTGCCTCGTCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCGTCCGC 17403 Query 153419 CAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGC 153478 |||||||| | |||| |||||| || || || | |||||| ||| ||| |||| Sbjct 17404 GAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGC-TCGGCCTCGG 17462 Query 153479 T-ATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTA 153537 || || |||| ||| ||||| | ||||||||||||||| || || || || | Sbjct 17463 GGATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGA 17522 Query 153538 TCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGG 153597 | | | || |||| ||| || ||||| | |||||| | | | | || || | Sbjct 17523 TGTCGTACAGCTTCTTGAAGTCGAAGGTCTTGTCGTCG-TTCACAAACTTGGA--CAGCG 17579 Query 153598 CAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCG 153656 | || ||||| || || || || || ||| || |||| || |||||| | | |||| Sbjct 17580 CGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACG-TGTACTCGAGCACCTCG 17638 Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716 |||||||||||| | || ||| | || ||||| || ||||| || ||| Sbjct 17639 CAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACAC 17698 Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAAC 153773 | ||| ||| | ||||||||||| ||| ||||||| |||| |||| ||| ||| Sbjct 17699 GAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAAC 17758 Query 153774 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCG 153833 | || | |||||| || | | || || ||||||||||| |||||| | | | Sbjct 17759 C---AGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGG 17815 Query 153834 TACAGTCGCTCAAACTCGTCGCCGTA-GCAGTCGGCGAGGCCGGGACACTGATGCGGACA 153892 ||||| ||| |||||||| || | | || | ||| || || || | ||| || Sbjct 17816 TACAGCGCCTCGAACTCGTCACCCCACGTCGT-GTAGAGACCCGGTGCCTCGTTCGGGCA 17874 Query 153893 CATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAG 153952 | ||| |||| ||| ||| | ||||| |||||| ||||| || | ||| | Sbjct 17875 GAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACAT 17934 Query 153953 CGCGTACATGAGGT--CGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTG 154010 |||||| | || | || |||| |||| ||| ||| ||| || || | | Sbjct 17935 CGCGTAGAACAGATCACGAGCGCGGTGCA--GCTCGTTGCCGTGGTTCTTCTTGAGGTCG 17992 Query 154011 A-GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACG 154069 | | || | | |||||||||||||||| || || | || | || | | || || || Sbjct 17993 AGGAACTCGA-AGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCG 18051 Query 154070 CTTTCCG---CCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTC 154126 ||| ||| |||||||| || | ||| || | | |||||| ||||||| |||||| | Sbjct 18052 CTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCAC 18111 Query 154127 CAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATG 154186 |||||| | | | |||||| || | ||| | | | ||||| | | || Sbjct 18112 GAGGCCGTTCGACGAGCCGTTCGTGCCACGGATGTACGAGTTGGTCGCGCGGATGTTGTG 18171 Query 154187 CACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCT 154246 |||| | || |||||||||||| | |||| || ||| ||||| | ||||| Sbjct 18172 CACGCTGACACCAATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTC 18231 Query 154247 GTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGG 154306 |||||||| ||||| ||||| | | |||||| ||| ||||| ||| ||||| Sbjct 18232 ATAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGG 18291 Query 154307 AATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCAT 154366 |||| || || || || || || |||||||||| || | |||| ||| Sbjct 18292 GCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACAT 18351 Query 154367 CATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCG 154426 |||||| |||| ||| | ||||| |||| ||| ||||||| |||||||| Sbjct 18352 GTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCG 18411 Query 154427 CATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 || | ||| |||||||| || || ||||| Sbjct 18412 CAGAATCATCTGCTGCGGGCGCTCAGCGAC 18441 >seq45 Length=43062 Score = 159 bits (176), Expect = 3e-34 Identities = 507/762 (67%), Gaps = 37/762 (5%) Strand=Plus/Plus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 |||||||||| ||||||||||||||| | ||||||||||| ||| ||| ||||||| | Sbjct 41378 ACGAGCGCTACTTTATCAAGCACGTGCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCA 41437 Query 52153 ACATTAACCTCATCGA-GTACAT--GCAGCGGAACGTTCCGGAACTCGAGGCGCAATACT 52209 || |||||| ||| | || | |||||| | || | || | ||||||| | || Sbjct 41438 ACGAGAACCTCG-CGATGAACTTTAGCAGCG--AGGTGCAGGTTCCTGAGGCGCGTTGCT 41494 Query 52210 TTTATAATTTGCA-AGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATT 52268 | || || || | ||| || ||| | | ||| ||||| ||||| |||||||| Sbjct 41495 TCTACGGCTTCCAGATTGCG-ATTGAGAACATCCACTCGGAGGTGTACTCGCTGCTCATC 41553 Query 52269 GAGCAGCTGATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATGCGTTCGAGCACG-T 52327 || | || || || || |||| || || || || ||||| ||| | Sbjct 41554 GACACGTACATCAAGGACCAGACCGAGAAGAACCACCTTCTTCGCGCCATCGAG-ACGAT 41612 Query 52328 GCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGA-GCGACACCGCCA 52386 || || || | || ||||| || ||||| | |||||| ||| ||| | | ||| Sbjct 41613 CCCTTGTGTGCAGAAGAAGGCCCACTGGGCGCTCAAGTGGTGCGACTCGCGCCGC-GCCG 41671 Query 52387 CGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCT 52446 || | |||||||| || || || ||||| ||||||||| | || || || ||| | Sbjct 41672 CGTTCGCCGAGCGTATCGTCGCGTTCGCTGCCGTCGAGGGCATCTTCTTCTCGGGCTCGT 41731 Query 52447 TTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 | | | ||||| | | || | | ||| | ||||| ||||| | ||| |||| Sbjct 41732 TCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTTATGCCTGGCCTCAGCTTCTCGAACG 41791 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACTACAAGA 52563 || | || ||||| ||||| || || ||| ||||| |||||||| |||| |||| Sbjct 41792 AGCTCATCTCGCGTGACGAGGGTCTCCACTGCGACTTCGCGTGCCTGCTGTACTCCAAG- 41850 Query 52564 CGCGCGTGACCGAAAAAT---TGGAT-TCGGA--CACGATCCTGAGCATGTTCAAGGAGG 52617 | || | | || | || | ||| | ||||| || ||| | || | Sbjct 41851 --CTCGCCAAC--AAGCTCCCTGAGTCTCGCATCCACGA----GATCATTCGC---GATG 41899 Query 52618 CGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGA 52677 | || || ||||| |||||||| | || | |||| ||||| ||||| | || |||| Sbjct 41900 CCGTCGCGATCGAGAAGGAGTTCGTCCAGGACTCGCTCCCGGTGGAGCTCATCGGTATGA 41959 Query 52678 ACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737 || || ||||||| ||||||| ||||| || ||||| || | ||| | Sbjct 41960 ACTCGTCTCTCATGTGCCAGTACATTGAGTTCTGCGCCGATCGCCTCCTCCACGCGCTTG 42019 Query 52738 G-GCAGCCAAAGTACTTCAACGC-TCGCAATCCGTTTGAGTTTATGAACAACATTTCGCT 52795 | | ||||| | || ||| | ||| || |||||||| | ||| ||| || ||||| Sbjct 42020 GCGTTGCCAAGAT-CTACAAGGTGTCG-AACCCGTTTGACTGGATGGACATGATCTCGCT 42077 Query 52796 TGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||||| ||||||||||| || |||||||| Sbjct 42078 CCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 42119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496193642844480