Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq217 250 3e-61 seq45 205 1e-47 seq440 89.7 6e-13 >seq217 Length=20966 Score = 250 bits (276), Expect = 3e-61 Identities = 774/1176 (66%), Gaps = 44/1176 (4%) Strand=Plus/Plus Query 116206 GCCTCGTCGGAATCAAACGCG-AGACGGCACAAA-ATAAATACATCCGCGAGACCTTGGA 116263 ||||||||| ||||||||| || | || | || || | ||||||||||| || | Sbjct 17357 GCCTCGTCGCTCTCAAACGCGTAGCC--CATGAGGATGAACGCGTCCGCGAGACCCTGCA 17414 Query 116264 CACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACG---GGAT 116320 | |||| ||| || ||||| || | || || |||| ||| ||| | || | Sbjct 17415 CGCCGATGCCGATCGGGCGGTGGCGCAGGTTGC---TTCGCTCGGCCTCGGGGATCGGGT 17471 Query 116321 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 116380 | | || | ||||| ||| | || || || ||||| ||||| ||||| || | | Sbjct 17472 AGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACA 17531 Query 116381 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACG 116440 |||| | | | || || | | || || || ||| |||| | || ||||| |||| Sbjct 17532 GCTTCTTGAAGTCGAAGGTCT---TGTCGTCGTTCACAAACTTGGACAGCGCGATGGACG 17588 Query 116441 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAAT 116500 | || || ||||| | | ||| || |||||||| | | || || | | Sbjct 17589 CGAGGTTGCACACCGCGACCTCGTCGGGCGACGTGTACTCGAGCACCTCGCAGCAGAGGT 17648 Query 116501 TTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 116557 | ||| || ||||| | ||||| || || ||||| |||||||| |||| Sbjct 17649 TG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACACGAGTCCT 17705 Query 116558 TGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACAT 116617 |||| ||||| || ||||| |||||||| | || |||| ||| || || ||| | Sbjct 17706 TGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGA--- 17762 Query 116618 CGGCGGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAG 116672 || |||| || | | | | ||| || || ||||| |||||||| ||| || Sbjct 17763 --GCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAG 17820 Query 116673 GGCCTCAAACTCTTCACCC-ACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGA 116731 ||||| ||||| |||||| || | | | |||| || ||||||| | || ||||| | Sbjct 17821 CGCCTCGAACTCGTCACCCCACGTCGTGT-AGAGACCCGGTGCCTCGTTCGGGCAGAACA 17879 Query 116732 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 116791 | ||| | || ||||||| |||||||||||||| || || ||||| | ||| Sbjct 17880 GGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGT 17939 Query 116792 AGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 116850 |||| ||||| ||| ||| || || | | || || || | || | || Sbjct 17940 AGAACAGATCACGAGCGCGGTGCAGCT-CGTTGCCGTGGTTCTTCTTGAGGTCGAGGAAC 17998 Query 116851 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA---CGA 116907 || | ||| || ||||||||||| || || |||| ||||| || |||||||| | Sbjct 17999 TCGAAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCG 18058 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 ||| |||| | ||||| | |||||| |||| || ||||| ||||| || | || || Sbjct 18059 CCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCG 18118 Query 116968 TCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGGCTCTGACATCGTGGATGT 117025 | || ||| || || || || || ||||| ||| | || | || | ||| | | Sbjct 18119 TTCGACGAGCCGTTCGTGCCACGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACGC 18176 Query 117026 GCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGA 117085 | |||||| || || |||||||| ||||| ||||||| | |||| || | |||| Sbjct 18177 TGACACCAATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGA 18236 Query 117086 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTG 117145 | || ||||||||||| |||| | |||| |||||||| ||||| || || | | Sbjct 18237 TGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCG 18296 Query 117146 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTAT 117205 | || || |||||||| || || || |||||||| |||| | | ||| ||||| | | Sbjct 18297 GCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACT 18356 Query 117206 CGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAA 117265 |||| ||||| | | | | ||||| | | ||| || |||| | ||| |||| || Sbjct 18357 CGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAA 18416 Query 117266 ACATGTATTG-GGGTGTTTCCATC-AGGATACCATCGAGCCTCTGGAGGTAACTCTTCTC 117323 ||| | || ||| | | || | | | ||| ||| | | ||||||| |||||| Sbjct 18417 TCATCTGCTGCGGGCGCT--CAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCTC 18474 Query 117324 CAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTC 117359 | ||||||| ||||| ||| | | ||| |||| Sbjct 18475 GAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTC 18510 >seq45 Length=43062 Score = 205 bits (226), Expect = 1e-47 Identities = 400/583 (69%), Gaps = 20/583 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || || ||||||||||||||||| ||||| || | ||| ||| | ||||| Sbjct 42120 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 42061 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 127349 | ||||| |||||| || | || |||||| | |||| | | |||||| | Sbjct 42060 CCAGTCAAACGGGTTCGACACCTTGTAGATC-TTGGCAACGCCAAGCGCGTGGAGGAGGC 42002 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||| | | | |||||||||||| |||| ||||||||||||||||| | Sbjct 42001 GATCGGCGCAGAACTCAATGTACTGGCACATGAGAGACGAGTTCATACCGATGAGCTCCA 41942 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 ||||||| |||| || |||| ||||||| || | || || || || | ||| ||| Sbjct 41941 CCGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCGACGGCATCGCGAATGATCTCGT 41882 Query 127470 GAATA-GTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG-----CAA 127523 | || | | | || | | ||| || |||| |||| | ||| | | Sbjct 41881 GGATGCGAGACTCAGGGAGCTTGTTGGCG---AG-CTTG--GAGTACAGCAGGCACGCGA 41828 Query 127524 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 127583 | || |||||||||||||||||| |||||||| || |||||||||| || || |||| Sbjct 41827 AGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 41768 Query 127584 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 127643 | || || |||||||| | |||||| || | || || ||||| ||||||||||| |||| Sbjct 41767 TAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 41708 Query 127644 CCACACACGCGAACGCAAATAGACGCTCGGCAAA---GGAGCGGGACTTTGTATCAAACC 127700 | || |||||||| | | ||||||||| || || |||| | | || ||| Sbjct 41707 CGACGGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGC---GAGTCGCACC 41651 Query 127701 ACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA 127760 |||| | |||||| || ||||| |||| | ||| |||| |||| ||| || || | Sbjct 41650 ACTTGAGCGCCCAGTGGGCCTTCTTCTGCACACAAGGGATCGTCTCGATGGCGCGAAGAA 41591 Query 127761 GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 | | ||||| || | | || ||||||||| | || ||||| Sbjct 41590 GGTGGTTCTTCTCGGTCTGGTCCTTGATGTACGTGTCGATGAG 41548 >seq440 Length=14964 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 176831 GGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTC 176890 ||||| || ||||||| ||| || ||||| |||||||| ||| | ||||| ||| || Sbjct 1724 GGGAAGACGCCGTAGTAATCGCGTCCAACAACAGAGAGGCCACTGATTGCGAAGGTTTTG 1665 Query 176891 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTG 176950 || || || ||||| |||| || ||||| || ||| || | || || || || | | Sbjct 1664 GCTGACTCGCCCTCAGTCAGAATCAGCGTGCAGTTTTGAGCCTTCGCTGTGCCGGCGTAG 1605 Query 176951 TTCGCATCGTCCAACTTGGGAATACCAGT 176979 ||||||||||| | ||| || || || || Sbjct 1604 TTCGCATCGTCGAGCTTTGGGATTCCTGT 1576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613422198577440