Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq217 152 8e-32 seq45 123 4e-23 seq191 87.8 3e-12 >seq217 Length=20966 Score = 152 bits (168), Expect = 8e-32 Identities = 315/462 (68%), Gaps = 9/462 (2%) Strand=Plus/Plus Query 204148 CCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCC 204207 ||| ||||| | | ||| |||||| || ||||| ||| | |||| || || || Sbjct 16972 CCAGATGCCGAGCTCGATGAGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCC 17031 Query 204208 GGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCC 204267 | ||||| | ||| || ||| |||| | ||||| || |||| || |||||||||||| Sbjct 17032 TGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCC 17091 Query 204268 GAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACC 204327 || ||||| ||||| ||||| ||||| || || || ||||| ||||||||||| || Sbjct 17092 GAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCC 17151 Query 204328 GTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA--TCGCAC-TGGGTTTCAC 204384 ||| | ||| ||| ||| || | || |||||| | || || | || | || Sbjct 17152 GTACTGCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCAGAGGCCGGACGTCGGCGTGAC 17211 Query 204385 GCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA 204444 ||||||||||||| |||| |||||||| | || || || ||||| ||| | | || Sbjct 17212 GCCCCACATGTCGTACTGGAAGATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTA 17271 Query 204445 AGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTC 204504 || | ||| | || |||| |||||| |||| ||| |||||| ||||| Sbjct 17272 CGGGCCGTGCTCCTTCGCGAGCTCCATCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTC 17331 Query 204505 AAAGATCTGAACGTTTAATCTGGCG-GCCTC--CGTTCCGTCAAACGCCAGACCCAGCAT 204561 ||||| | | || | || ||| ||||| || || |||||||| |||| | Sbjct 17332 GAAGATGTTCTTG-TTGAGCTCGCGTGCCTCGTCGCTC--TCAAACGCGTAGCCCATGAG 17388 Query 204562 GGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGG 204603 | ||| ||||||| | |||||||| ||||| || | ||| Sbjct 17389 GATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGG 17430 Score = 131 bits (144), Expect = 3e-25 Identities = 446/677 (66%), Gaps = 26/677 (4%) Strand=Plus/Plus Query 204931 CTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTC 204990 ||||||||| |||||||||||||| ||||||||||||| |||| ||||| | || |||| Sbjct 17674 CTGCTGGTTCGACTTGCGGTTACACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTC 17733 Query 204991 CATCTGAGA-TCGCAGAATGTGGGTCCACAATT----CGCGAGCCTCCACTTGCTTCACG 205045 ||||| || ||| || || | ||| | | |||| | || ||||| || Sbjct 17734 GATCTGCGACTCG-AGGATCGCGAACCAGAGCTGCTGCGCGCGGATCGTCTTGCG---CG 17789 Query 205046 TACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCC 205105 | |||| | | |||||| | |||||||||| | || || ||| |||||| Sbjct 17790 CGCGGCCCTCGCG-CTCGTACTGGTGGTACAGCGCCTCGAACTCGTCACCC--CACGTCG 17846 Query 205106 ATCAG---CCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACC 205162 || ||| | | | || ||| || | ||| |||| | | | | || Sbjct 17847 TGTAGAGACCCGGTGCCTCGTTCGGG-CAGAACAGGCTCCACTCGCCGTTGGCCTCAACG 17905 Query 205163 CTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCG 205222 | || ||| || || ||| ||||||| |||| ||||||||||| || | | | | Sbjct 17906 CGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAACAGATCACGAGCGCGG-TGCAG 17964 Query 205223 -TCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCT 205280 |||| || ||||||| || | ||| || || || | ||||||||||||||||||| Sbjct 17965 CTCGTTGCCGTGGTTCTTCTTGAGGTCGAGG-AACTCGAAGATGTCGGCGTGCCACGGCT 18023 Query 205281 CTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCA 205340 | | ||| || | | ||| | |||| |||||||| ||||| || | | Sbjct 18024 CGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCG 18083 Query 205341 TCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGA 205400 | ||||||| || |||||||| ||||| || ||||| | | |||||||||| || Sbjct 18084 TGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCACGGA 18143 Query 205401 TGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGG 205460 || |||| || | | |||| | | | ||||| ||||| | ||||||| Sbjct 18144 TGTACGAGTTGGTCGCGCGGATGTTGTGCACGCTGACACCAATGCCGCCGGCCCACTTGG 18203 Query 205461 CGATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGT 205519 ||| |||||||| |||| || ||| |||||||| |||| || |||||| || Sbjct 18204 AGATGCAGGCGCACTGCTTG-AGCGTGTCATAGATGCCCTCGATCGAGTCGTCCTTCATG 18262 Query 205520 GTCACCAGATAGCACGAAGCCAGCT--TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGG 205577 | | ||| ||||||| | ||||| ||| | ||||| |||| ||| ||||| | Sbjct 18263 GCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGG--CGTGCCGGCGTTGAACAGCGTCG 18320 Query 205578 GGCTGGCGTGGCTGAAG 205594 | | ||||| ||||| Sbjct 18321 GCGTCGCGTGCGTGAAG 18337 >seq45 Length=43062 Score = 123 bits (136), Expect = 4e-23 Identities = 261/382 (68%), Gaps = 12/382 (3%) Strand=Plus/Minus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| |||||||| ||||||||||| || |||||||| || ||||||| |||||| || | Sbjct 41842 ACAGCAGGCACGCGAAGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGA 41783 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | ||||||| ||||| | || ||| |||||||| || || | ||| || | | | Sbjct 41782 AGCTGAGGCCAGGCATAAGGCCGCGCTTCTTGAGCCAGAAGATAG-AGCAGAACGAGCCC 41724 Query 160035 TA-AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 | || ||||| ||||| ||||| || ||||| |||| | ||| | || | ||| Sbjct 41723 GAGAAGAAGATGCCCTCGACGGCAGCGAACGCGACGATACGCTCGGCGAACGCGGC---- 41668 Query 160094 GTGTCATGGGTC-CACCTTTTG---GCCCATTCAGCCTTCTT-TGCGATGCACGGCATGC 160148 | | | | ||| |||| ||| ||||| | |||||||| ||| | || || || Sbjct 41667 GCGGCGCGAGTCGCACCACTTGAGCGCCCAGTGGGCCTTCTTCTGC-ACACAAGGGATCG 41609 Query 160149 GCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCA 160208 ||||| |||| || | || || ||| || |||||||| || | || | Sbjct 41608 TCTCGATGGCGCGAAGAAGGTGGTTCTTCTCGGTCTGGTCCTTGATGTACGTGTCGATGA 41549 Query 160209 GCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATG 160268 || |||||||| || | ||| | || || || || ||||| ||| |||||| | Sbjct 41548 GCAGCGAGTACACCTCCGAGTGGATGTTCTCAATCGCAATCTGGAAGCCGTAGAAGCAAC 41489 Query 160269 TCGCCTCCAGATACTGCACCTC 160290 |||||| || ||||||||| Sbjct 41488 GCGCCTCAGGAACCTGCACCTC 41467 >seq191 Length=22522 Score = 87.8 bits (96), Expect = 3e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 116094 TCGTGTCTGTTTTACCAAAGATCTGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCG 116153 ||||||| | | ||||| | || || |||||||| | ||||| || |||||| | ||| Sbjct 15444 TCGTGTCAGATGTACCAGCGCTCAGCTGACATGGGACTCGGCGTGCCTTTTAACATCGCG 15503 Query 116154 AGCTACGCGCTACTGACTCATATTATGGCACATTTGGCGGACCTGGAAGTCGGAGAATTG 116213 ||||||||||| |||||| | || || || | | | ||| | ||||| || Sbjct 15504 AGCTACGCGCTGTTGACTCGACTCATCGCGCAGGTCACAGGGCTGCGTGCTGGAGACTTC 15563 Query 116214 ATACACTCTATTGGGGACGCGCACATCTACACCAACCATGTGG 116256 || ||| | || || || |||||||||||| |||||||||| Sbjct 15564 ATCCACACGATCGGCGATGCGCACATCTACTTGAACCATGTGG 15606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795045031247040