Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq217 163 3e-35 seq73 141 1e-28 seq45 105 8e-18 >seq217 Length=20966 Score = 163 bits (180), Expect = 3e-35 Identities = 721/1126 (64%), Gaps = 34/1126 (3%) Strand=Plus/Plus Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151 || || ||| | ||||| |||||||| || |||| || || ||||| || || ||| Sbjct 17387 AGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTT- 17445 Query 110152 GAGCGTCGAGCAGTTTCTACG---GGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTC 110208 || ||| | | || | ||||| ||||| |||||||||| ||||| || Sbjct 17446 --GCTTCGCTCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTG 17503 Query 110209 TTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA 110268 ||| || ||| ||||| || | || || | | | ||||| || || || | Sbjct 17504 CGCGTGACGACCTTGGTGATGTCGTACAGCTTCTTGAAGTCGAAGGTCTTG---TCGTCG 17560 Query 110269 TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG 110328 || ||| | |||| || || || ||||| || |||||||| | |||||| | || Sbjct 17561 TTCACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCG--GGCG 17618 Query 110329 --GTGTATTCCAAAATTTCCGTACACAAGTTG---GAACTCTTAATGACACCCAAGTTCT 110383 ||||| || | | || || | |||| || | | || || | ||||| Sbjct 17619 ACGTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTG---CCGAGGTTCT 17675 Query 110384 TCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCG 110443 ||| ||||| ||| ||| || | ||||| || |||||||| || || || || || Sbjct 17676 GCTGGTTCGACTTGCGGTTACACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGA 17735 Query 110444 TCTGTGACTTGAGAATGGCCTTCCATACAT-CGGCGGCGGGGACAGT--TGCGTTAGCGA 110500 |||| |||| ||| || || ||| | | | ||| || ||| || |||| ||| Sbjct 17736 TCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCG-CGCGGATCGTCTTGCGC--GCGC 17792 Query 110501 GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAG--A 110558 | || || |||||||| | ||||| |||| || || | || ||| || | Sbjct 17793 GGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCACCC--CACGTCGTGTA 17850 Query 110559 AAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTT 110618 |||||| |||| || || ||||| ||| ||| | || ||||||| | ||| Sbjct 17851 GAGACCCGGTGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTT 17910 Query 110619 CATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTCTTCAT 110677 |||||| || || |||||||||||||| |||| || ||||| || | || | || | Sbjct 17911 CATGAAGAGATCGGGAATCCACATCGCGTAGAACAGATCACGAGCGCGGTGCAGC-TCGT 17969 Query 110678 CACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGAT 110737 || ||||| || || | || || | ||| || | |||||| || ||||||| Sbjct 17970 TGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGAT 18029 Query 110738 AGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCAT 110794 | | |||| || ||||| || | || |||| | ||||| || || ||| | | Sbjct 18030 ACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGT 18089 Query 110795 TGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGG 110854 |||| || | ||||| || | | || | || || || || || | || | Sbjct 18090 TGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCACGGATGTACG 18149 Query 110855 ACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTT 110914 | || | || || |||| ||| | | |||||| || || |||||||| || Sbjct 18150 AGTTGGTCGCGCGGATGTTGTGCACGCTGACACCAATGCCGCCGGCCCACTTGGAGATGC 18209 Query 110915 GTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTA 110974 || |||| |||| || |||| || || || ||||| || |||| |||| | | Sbjct 18210 AGGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCA 18269 Query 110975 GAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCAT 111034 | ||||| || |||| ||| || || ||||| || || ||||| || || || ||||| | Sbjct 18270 GGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGT 18329 Query 111035 GAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTAC 111094 | |||| | | ||| ||||| | | ||| || ||||| |||| | | || | Sbjct 18330 GCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCT 18389 Query 111095 CGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCAT 111154 ||| || || | || || |||| | ||| | || || || | ||| ||| Sbjct 18390 TGTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCGCTCAGCGACCTTGCCAC 18449 Query 111155 CAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 | || ||| | ||||| |||||| || ||||||| |||||||| Sbjct 18450 CGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTA 18495 >seq73 Length=35360 Score = 141 bits (156), Expect = 1e-28 Identities = 330/492 (67%), Gaps = 33/492 (7%) Strand=Plus/Plus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||||| ||||||||||||||| || || || | || | || ||||| ||||||||||| Sbjct 15421 AATCTGACGATCGAAACGACCCGGACGAAGAATGGCCTTGTCGAGAATGTCGACACGGTT 15480 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAG 11612 ||| | |||| || || | ||| ||| | || ||| |||||||| || ||| Sbjct 15481 CGTACCCGCAAGCACAACCACGCC---CTCGCTCGAGTTGAAGCCGTCCATCTCGACGAG 15537 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTT 11672 |||||||||| || | || ||||| || || |||||| | ||||| | Sbjct 15538 CAGCTGGTTGAGTGTGTTCTCTCGCTCGTCATT---------ACCACCAGA-GAACGTTC 15587 Query 11673 C-TTAC------------CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGT 11719 | |||| ||||||| || || ||||||||||| || || ||||| || Sbjct 15588 CCTTACTACGTGCACGAGCGACAGCATCGATTTCATCGATGAAGACAATGCACGGAGAGT 15647 Query 11720 TGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCT 11779 | || || || | ||| | ||||| |||||| || || ||||| || ||||||| Sbjct 15648 TTGCCCGAGCTTCACGGAACAAATCACGCACACGCGACGGACCCACACCGACAAACATCT 15707 Query 11780 CAACGAAGTTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCT 11838 ||| ||| | | | | | || |||||| ||| || ||| ||| ||||| || | || Sbjct 15708 CAATGAAATCCGAGCCCGAAATACTGAA-GAATGGCACACTAGCTTCACCGGCCGTTGCC 15766 Query 11839 CGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATC 11898 || || || |||||||| || || || | || | || | ||| || |||||| Sbjct 15767 TTCGCAAGCAGGGTCTTACCAGTGCCCGGAGGTCCGACAAGCAAGGCACCCTTCGGGATC 15826 Query 11899 TTGGCACCACTTCCAAAGTAGCGC-TCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAG 11957 ||||||||| || | | ||| || || ||| |||||| || |||| |||| | Sbjct 15827 TTGGCACCAAGATCAGTGAATCGCTTCTGGTTTC-GGAGGAAATCAACAAACTCCATGAT 15885 Query 11958 TTCCTCCTTGGC 11969 ||||| ||| || Sbjct 15886 TTCCTTCTTCGC 15897 >seq45 Length=43062 Score = 105 bits (116), Expect = 8e-18 Identities = 172/243 (71%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || ||||| || |||||||| || || Sbjct 41819 TGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATAAGGCCG 41760 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||| | || || || || |||||||||||||| || Sbjct 41759 CGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCGACGGCA 41700 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAG--ACTTGTCGAACCACTTGAGAGCC 119684 ||||| |||| | |||||| || || | | || | | |||| |||||||||| ||| Sbjct 41699 GCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCGAGTCGCACCACTTGAGCGCC 41640 Query 119685 CAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAA-AAGTTGCTTCTT 119743 |||| |||||| || | || |||| || | |||||| |||| ||| || ||||| Sbjct 41639 CAGTGGGCCTTCTTCTGCACACAAGGGATCGTCTCGATGGC-GCGAAGAAGGTGGTTCTT 41581 Query 119744 TTC 119746 || Sbjct 41580 CTC 41578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588894397375200