Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq217 233 2e-56 seq45 143 3e-29 >seq217 Length=20966 Score = 233 bits (258), Expect = 2e-56 Identities = 577/861 (67%), Gaps = 17/861 (2%) Strand=Plus/Plus Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603 ||||| || | |||| ||||| ||| ||| |||| |||||||| |||||||| Sbjct 17660 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACACGAGTCCTTGTACAGCATGTAC 17719 Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCG-GCTGGTA 106661 ||||| |||||||| |||| |||| ||| || || ||| | | | ||| || | | Sbjct 17720 GGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATC 17779 Query 106662 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 106721 | ||| || || ||||| |||||||| ||| || || || ||||| |||| Sbjct 17780 GTCTTGCGC--GCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCAC 17837 Query 106722 CCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCC 106780 || || ||| | ||||||| ||||||| || || ||||| || ||| | || Sbjct 17838 CCCACGTCGT-GTAGAGACCCGGTGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTG 17896 Query 106781 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CA 106839 ||||||| ||||||||||| || || |||||||||| | | || ||||| | | | Sbjct 17897 GCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAACAGATCACGAGCG 17956 Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGT 106898 | | || | |||| || ||||| || | | || |||||||| | ||| || |||| Sbjct 17957 CGGTGCAGC-TCGTTGCCGTGGTT-CTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGT 18014 Query 106899 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACAT 106955 |||| ||||| ||||| | |||| || ||||| || | ||| | |||| |||| Sbjct 18015 GCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACAT 18074 Query 106956 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 107015 | ||||| ||| |||| || ||||| ||||| || | | || | || || || | Sbjct 18075 AACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCG 18134 Query 107016 TCCCCCGAA--TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 107073 | || || | |||||| || | || | | | || | | | ||||| || || Sbjct 18135 TGCCACGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACGCTGACACCAATGCCGCC 18192 Query 107074 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 107133 |||||||| ||||| || |||| | | || || ||||||| || | ||| ||||| Sbjct 18193 GGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTC 18252 Query 107134 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 107193 ||||| |||||| |||||||| |||| |||||| | || || || || ||||| Sbjct 18253 GTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAA 18312 Query 107194 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 107253 || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | | Sbjct 18313 CAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGC 18372 Query 107254 AGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGT 107313 | || ||||| | | ||||||||||| || || |||| || ||| | || || Sbjct 18373 GGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCG 18432 Query 107314 TTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAA 107373 || || ||||| ||| || | || || |||||| || || |||| ||||| Sbjct 18433 CTCAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAA 18492 Query 107374 GTAACCAAAATCATAGTCCCG 107394 ||| | | ||| |||| || Sbjct 18493 GTAGTCGTACTCAAAGTCGCG 18513 >seq45 Length=43062 Score = 143 bits (158), Expect = 3e-29 Identities = 385/578 (67%), Gaps = 18/578 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 42119 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 42060 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACG 117104 ||||||| || ||| | | || | || ||||| | |||| | |||||| || Sbjct 42059 CAGTCAAACGGGTTCGACACCTTGTAGATCT-TGGCAACGCCAAGCGCGTGGAGGAGGCG 42001 Query 117105 ATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 ||| | || | |||||||||||| | |||| ||||||||||||||||| | Sbjct 42000 ATCGGCGCAGA-ACTCAATGTACTGGCACATGAGAGACGAGTTCATACCGATGAGCTCCA 41942 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 ||||| | |||| || |||| | ||||| ||| | || || || | ||| ||| Sbjct 41941 CCGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCGACGGCATCGCGAATGATCTCGT 41882 Query 117224 GGAT---AGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAA 117277 |||| || || | || || | || | |||| || | || | || | Sbjct 41881 GGATGCGAGACTCAG----GGAGCTTGTTGGCGAG--CTTGGAGTACAGCAGGCACGCGA 41828 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | || |||||||||||| || || || || || || || ||||||| ||||| |||| Sbjct 41827 AGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 41768 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 | || || |||||||| | ||| | |||| |||||| || || ||||||||||| |||| Sbjct 41767 TAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 41708 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAA-GGAGCGAGACTTTGTGTCAAACCAT 117456 | || || ||||| | | ||||||||||| | ||| | | | ||| |||| Sbjct 41707 CGACGGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGC-GCGAGTCGCACCAC 41649 Query 117457 TTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAAC 117516 || | ||||| | |||||||||| | ||| || | || | |||||| || | Sbjct 41648 TTGAGCGCCCAGTGGGCCTTCTTCTGCACACAAGGGATCGTCTCGATGGCGCGAAGAAGG 41589 Query 117517 TGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 117554 || ||||| || | ||||| ||||| |||| || Sbjct 41588 TGGTTCTTCTCGGTCTGGTCCTTGATGTACGTGTCGAT 41551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589899058160160