Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq191 219 3e-52 seq1775 82.4 6e-11 >seq191 Length=22522 Score = 219 bits (242), Expect = 3e-52 Identities = 411/603 (68%), Gaps = 1/603 (0%) Strand=Plus/Minus Query 29789 CGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGT 29848 |||||||| ||| ||||||||||| || | || ||||| ||| || || || | |||| Sbjct 15627 CGAGCTGAACCTTAAGCGGTTCCACATGGTTCAAGTAGATGTGCGCATCGCCGATCGTGT 15568 Query 29849 GGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGT 29908 ||| || ||||| | ||||| ||||| || || || | || | || | || Sbjct 15567 GGATGAAGTCTCCAGCACGCAGCCCTGTGACCTGCGCGATGAGTCGAGTCAACAGCGCGT 15508 Query 29909 AGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGAC 29968 |||| ||||||||||| || || ||||| |||||||| | || | |||||| | ||||| Sbjct 15507 AGCTCGCGATGTTAAAAGGCACGCCGAGTCCCATGTCAGCTGAGCGCTGGTACATCTGAC 15448 Query 29969 ACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCA 30028 |||| ||||| |||| | ||||| ||||| || | |||| ||||| || || |||| Sbjct 15447 ACGACAGCTCGCCGTTGGCGACGTAGAACTGGCAGAACATGTGACACGGCGGCAGCGCCA 15388 Query 30029 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30088 | | ||| |||||||| || ||| ||||||||| | || | |||||| Sbjct 15387 TCTCCTTGAGGTCCGCAGGGTTCCATGCCGACATGATGATGCGACGATCGTTTGGGTTCG 15328 Query 30089 TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCC 30148 || ||| || | | | | |||||| || || ||| || | ||| || || Sbjct 15327 TCTTGAGCTTGTGAATGACCTCCGCCAGCTGGTCGACTCCCTGGCCAGTGTAATCGGCGT 15268 Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| |||||||| || || || || | ||||||||| || ||||| ||||| || | Sbjct 15267 GCATGGTCGTGTACTTGGCACCAAAGTGGCGCCACTGGAAGCCATACACTGGTCCGAGAT 15208 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 | || |||| | || ||| || | | |||| | || |||| || || | | Sbjct 15207 CGCCAGCTTCACGATGACCGAGACCGATGCTCTCCAGGTATTCCTTGGATCCATTACCAT 15148 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||| || | | ||||| || | | |||| ||||||| || |||| ||||| Sbjct 15147 CCCAAATGTGGATGCCCTTGTCCTGCAACGTCTTGGCGTTTGTGTCGCCACTGATGAACC 15088 Query 30329 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAAAC 30387 |||||||||| ||| ||||| | ||| || || | |||||||| || || |||||| Sbjct 15087 ACAGCAGCTCTTCCGCGACGCCGCGCCAGAATACGCGTTTGGTCGTCAGCAGCGGGAAAA 15028 Query 30388 TGT 30390 ||| Sbjct 15027 TGT 15025 >seq1775 Length=5132 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/130 (78%), Gaps = 6/130 (5%) Strand=Plus/Minus Query 52047 CCAGAGATGGGCGACAAGTTT-GC-GTCGTTCACGGCGCAAAAGGGGACGTGCGGAGCCG 52104 || ||||| ||||||||||| || |||| |||||| || ||||| |||||| | Sbjct 1052 CCCGAGATCGGCGACAAGTTCAGCAGTCGC-CACGGC-CAGAAGGGCGTGTGCGGCACGA 995 Query 52105 TCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCC-GACCTCATCATC 52163 ||| | ||||||||||||||| ||| || | ||||| || |||||| ||||| ||||| Sbjct 994 TCCGCAACCAGGAGGACATGCCGTTCAACGACGACGGCGT-GTGCCCGGACCTGATCATG 936 Query 52164 AACCCCCACG 52173 ||||| |||| Sbjct 935 AACCCGCACG 926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408562401380732