Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq217 315 1e-80 seq45 235 1e-56 >seq217 Length=20966 Score = 315 bits (348), Expect = 1e-80 Identities = 993/1515 (66%), Gaps = 49/1515 (3%) Strand=Plus/Plus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||| || ||| ||| || |||| ||||| | | | ||| | ||| | ||| | || Sbjct 17011 GTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGG 17070 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 |||||| ||||||||| || || ||||| || || || || ||||| || || | Sbjct 17071 CTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAG 17130 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCA 213088 ||| || ||| | ||| |||| || ||| | | | ||| | ||||||||||| Sbjct 17131 CAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCA 17190 Query 213089 TCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCT 213148 ||| ||| ||| ||| ||| ||||||||| |||| |||||||| ||||| Sbjct 17191 GAGGCCGGAC--GTCGGCGTG----ACGCCCCACATGTCGTACTGGAAGATGCCCTTGCT 17244 Query 213149 CACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGC 213208 |||||| ||||| ||| || ||| ||||| |||||||| || ||||| || || Sbjct 17245 CACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTCCATCGAGGC 17304 Query 213209 CTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGG 213268 || || || || |||| | || || || || | | ||||||||| ||||| Sbjct 17305 CTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGTGCCTCGTC 17364 Query 213269 GGACGTGAAGG-GCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGC 213327 | | || | | | | |||| | |||| | || || || ||||| || ||||||| Sbjct 17365 GCTCTCAAACGCGTAGCC-CATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGC 17423 Query 213328 CGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCA--CTCCTCCAAGGGGTAAAAGTTGCA 213385 |||| || | ||| | |||||| ||| | | ||| | ||||| ||||| Sbjct 17424 CGATCGGGCGGTGGCGCAGGTTG--CTTCGCTCGGCCTCGGGGATCGGGTAGTAGTTGAT 17481 Query 213386 GTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTG 213445 |||||||| ||||||||||||||| ||| | || ||||||| | | ||| | | Sbjct 17482 GTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTTC----- 17536 Query 213446 ATTGAACACGTAGCCC---CCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTT 213502 ||||| || || | |||| | |||||||| | ||| |||||| || ||||| Sbjct 17537 -TTGAAGTCGAAGGTCTTGTCGTCGTTCACAAACTTGGACAGCGCGATGGACGCGAGGTT 17595 Query 213503 GCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGC 213561 ||| || || ||||| | | | | | |||||||| | | |||| ||| |||||||| Sbjct 17596 GCACACCGCGACCTCGTCGGGCGAC-GTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCG 17654 Query 213562 ATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGC 213620 | ||||| ||||| |||||||| ||||| ||| ||||| | || || |||||||| ||| Sbjct 17655 AGCGGATCGTGCCGAGGTTCTGCTGGTTCGAC-TTGCGGTTACACGAGTCCTTGTACAGC 17713 Query 213621 ATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCC 213680 ||||| || | || ||||| | ||| ||| | || ||| | |||||| | | || Sbjct 17714 ATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCG 17773 Query 213681 TTGACCACCCGCCTGACAGCTC-CGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGA 213738 || || || | || | ||| | | || ||||||||| | ||| ||| | | || Sbjct 17774 CGGA----TCGTCTTGC-GCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGA 17828 Query 213739 ATTCGTGGCCCCAGACCCTGTCCAGTCCCGG-ACAGGATGCGGGACACATGAGGCTCCAG 213797 | |||| ||||| | ||| || ||||| | | |||| || | |||||||| Sbjct 17829 ACTCGTCACCCCACGTCGTGTAGAGACCCGGTGCCTCGTTCGGG-CAGAACAGGCTCCAC 17887 Query 213798 TCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGG 213857 || |||| | || | || |||||| || || || | ||||| |||| |||||| Sbjct 17888 TCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAACAGA 17947 Query 213858 TCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914 || | | | | ||||| || ||| || || || || || || ||| Sbjct 17948 TCACGAGCGCGGTGCAGCTCGT---TGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAG 18004 Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGCCG---CCC 213971 ||||| |||||||||||||| | || || || || | |||| | ||||||| ||| Sbjct 18005 ATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCC 18064 Query 213972 TGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGAC 214031 || ||||| | ||| |||||| | |||||| | ||| || || ||||| ||| Sbjct 18065 TGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGAC 18124 Query 214032 TGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCT 214091 ||||| || || || |||||| || || | | |||| || | || || Sbjct 18125 GAGCCGTTCGTGCCACGGATGTACGAGTTGGTCGCGCGGATGTTGTGCACGCTGACACCA 18184 Query 214092 ATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCC 214151 ||||| ||||| |||||||||| |||||| || | | || || |||||| | Sbjct 18185 ATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCCTCG 18244 Query 214152 ATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCA 214211 || ||| || | | | |||| |||||| ||| ||||| || | | || ||| Sbjct 18245 ATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCG 18304 Query 214212 GAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTC 214271 | |||||| ||||| || | || || | | || | | || | | | ||| ||| Sbjct 18305 GCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTC 18364 Query 214272 TCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGC 214331 || || | | | |||||| ||||||||||| | |||| | || | ||| ||| Sbjct 18365 TCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCATCTGC 18424 Query 214332 TGGGGCCTCTCTATGGGTCCTTTGGGGCCCTTG---AGCAGGTAGGAGCGCTCCAGAGTC 214388 || || | ||| | | || ||| || | || ||||| || ||| || ||| Sbjct 18425 TGCGGGCGCTC--AGCGACC-TTGCCACCGACGCGCAGGAGGTACGACTTCTCGAGCGTC 18481 Query 214389 TTGAACCCAAAGTAG 214403 ||||| ||||||||| Sbjct 18482 TTGAAGCCAAAGTAG 18496 >seq45 Length=43062 Score = 235 bits (260), Expect = 1e-56 Identities = 565/844 (67%), Gaps = 23/844 (3%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| | |||||| | ||||| Sbjct 42120 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 42061 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || || ||||| | || || | | | | ||| | | | || ||| | Sbjct 42060 CCAGTCAAACGGGTTCGACACCTTGTAGATCTTGGCAACGCCAAGCGCGTGGAGGAGGCG 42001 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 ||| ||| | |||| ||||| | ||||||| | |||||| || ||||| ||| Sbjct 42000 ATCGGCGCAGAACTCAATGTACTGGCACATGAGAGACGAGTTCATACCGATGAGCTCCAC 41941 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | || ||||||||||| ||| ||||| || | | |||| | Sbjct 41940 CGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCGACGGCATCGCGAATGATCTCGTG 41881 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 | ||| ||||| | | | |||||| || | |||||| || |||| ||| || ||||| Sbjct 41880 GATGCGAGACTCAGGGAGCTTGTTG-GC--GAGCTTGGAGTACAGCAGGCACGCGAAGTC 41824 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | ||| | || ||||| || ||||||| |||| ||||||| ||| |||||||| | Sbjct 41823 GCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATAAG 41764 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| ||||| ||||||||||||||||| || Sbjct 41763 GCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCGAC 41704 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC---GTTCTTGTCTGAGATCCAGGA 48318 || ||||||||| || | ||| |||| | || | | ||| | ||| Sbjct 41703 GGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCGAGTC---GCACCACTT 41647 Query 48319 AAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG--GAA-GAG 48375 |||||||||| |||||||||| | || || |||||||| ||||| || ||| | | Sbjct 41646 GAGCGCCCAGTGGGCCTTCTTCTGCACACAAGGGATCGTCTCGATGGCGCGAAGAAGGTG 41587 Query 48376 CTTCTTGCACTC-ACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCT 48431 ||||| ||| ||| |||| | || || |||||||| | ||||| || Sbjct 41586 GTTCTT---CTCGGTCTG-GTCCTTGATGTACGTGTCGATGAGCAGC---GAGTACACCT 41534 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || || |||||||| ||||||||| | |||||| |||| Sbjct 41533 CCGAGTGGATGTTCTCAATCGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCAGGAACCT 41474 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 |||| || || || || | || ||||| ||||| || ||||| || || | Sbjct 41473 GCACCTCGCTGCTAAAGTTCATCGCGAGGTTCTCGTTGACGATGCCATCACTGGCCGCGA 41414 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT 48611 |||| || || || || || | || | ||||||||||| ||||| |||||| ||| Sbjct 41413 AGAACGCGAGCACGTGCTTGATAAAGTAGCGCTCGTTGTCCGTGAGGTTGTTCCAGTCCT 41354 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGT 48671 | ||| | | ||||| | ||||| | ||||||||| ||| || || |||| Sbjct 41353 TGAGGTCGTGCACGAGGTCAATCTCTTCAGCCGTCCAGAAGCTCGCCTCAGCCTTCTTGT 41294 Query 48672 ACAT 48675 |||| Sbjct 41293 ACAT 41290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931403736130560