Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq45 192 1e-43 seq217 161 2e-34 >seq45 Length=43062 Score = 192 bits (212), Expect = 1e-43 Identities = 391/570 (69%), Gaps = 18/570 (3%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAA---AACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 ||| ||||||||||||||||| | | || |||||| || ||||||||||| || Sbjct 41284 TGGCAGATGTACAAGAAGGCTGAGGCGAGCTT---CTGGACGGCTGAAGAGATTGACCTC 41340 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | | ||| | | | |||| || || | | |||||| | ||| ||||| || Sbjct 41341 GTGCACGACCTCAAGGACTGGAACAACCTCACGGACAACGAGCGCTACTTTATCAAGCAC 41400 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-GAGATT 25655 ||| | || ||||| || ||| |||||| || || |||||||| || |||| || || Sbjct 41401 GTGCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTC-GCGATGAACTT 41459 Query 25656 CACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 | ||| || |||||| | | || |||| || |||||||| |||||||| || || | Sbjct 41460 TAGCAGCGAGGTGCAGGTTCCTG-AGGCGCGTTGCTTCTACGGCTTCCAGATTGCGATTG 41518 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCG 25771 | || | ||||| |||||||| | ||| || || |||||||| | ||| Sbjct 41519 AGAACATCCACTCGGAGGTGTACTC---GCTGCTCATCGACACGTACATCAAGGACCAGA 41575 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 |||||| | | || || | ||||||||| || || | | ||| |||||| | Sbjct 41576 CCGAGAAGAACCACCTTCTTCGCGCCATCGAGACGATCCCTTGTGTGCAGAAGAAGGCCC 41635 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||| | |||||| | || | |||| |||| | |||||| | || || | Sbjct 41636 ACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCGCCGCGTTCGCCGAGCGTATCGTCGCGT 41695 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 | ||||| || ||||||||||| ||| || ||||| ||| | ||||||||||||||| Sbjct 41696 TCGCTGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-TCTATCTTCTGGCTCAAG 41754 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || ||||| || || ||| || |||||||||||| | ||||||||| Sbjct 41755 AAGCGCGGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACGAGGGT 41814 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||| | || || || |||||||| ||| Sbjct 41815 CTCCACTGCGACTTCGCGTGCCTGCTGTAC 41844 >seq217 Length=20966 Score = 161 bits (178), Expect = 2e-34 Identities = 736/1153 (64%), Gaps = 42/1153 (4%) Strand=Plus/Plus Query 221508 CGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCG 221567 |||| || || ||||| || ||||| ||||| || | ||| | | |||| | | Sbjct 17397 CGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCTCGG 17456 Query 221568 CTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTT 221627 | || || | || || |||||| |||||| | ||||||||||| | |||| ||| | Sbjct 17457 CCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCT 17516 Query 221628 TAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTT 221687 | | ||| |||||||| | || ||| | ||| || | ||| Sbjct 17517 TGGTGATGTCGTACAGCTTCTTG------------AAGTCGAAG--GTCTTGTCGTCGTT 17562 Query 221688 CCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGG 221747 | ||||| | || || | | || ||||| ||||| || |||||||| | Sbjct 17563 C-ACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACG 17621 Query 221748 TATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGAT 221807 | |||| | | ||| ||||||||||| | ||| || || |||| | || | Sbjct 17622 TGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGT 17681 Query 221808 TAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAG 221867 | |||||||| || | ||||||||| ||||| | || ||| ||||| | ||| | Sbjct 17682 TCGACTTGCGGTTACACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCG 17741 Query 221868 CCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCAC---CC 221923 | | || ||| | |||||| | ||| |||| | |||| ||| || | || Sbjct 17742 ACTCGAGGATCGCGAACCAGAGCTG-CTGCGCGCGGATCGTC---TTGCGCGCGCGGCCC 17797 Query 221924 TCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGG 221983 ||| || | ||| | || ||| || |||| ||||| ||| | || || Sbjct 17798 TCGCGCT---CGTACTGGTGGTACAGCGCCTCGAACTCGTCACCCCACGTCGTGTAGAGA 17854 Query 221984 CCTGGACACCTGG--CGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCA 222041 || || ||| | |||| || | ||| ||||| | |||| | | || | || || Sbjct 17855 CCCGGTG-CCTCGTTCGGG-CAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCA 17912 Query 222042 TGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGC 222101 ||||||| || || ||||||| ||| | || ||||| | | || ||| ||| || Sbjct 17913 TGAAGAGATCGGGAATCCACATCGCGTAGAACAGATCACGAGCGCGGTGCAGCTCGTTGC 17972 Query 222102 CGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGA 222161 ||| ||| ||| | || || | ||||| || ||||| |||||||||||||| ||||| | Sbjct 17973 CGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGATACA 18032 Query 222162 CGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGA 222221 || | | ||| |||||| ||||||||||||||| | | || |||||| Sbjct 18033 TCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGA 18092 Query 222222 AGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGA-CCGTTGGTGCCCTTAATGTACGCA 222280 | | ||| || | || || || ||||| || ||| ||||| ||||| ||||||| Sbjct 18093 ACACGCGCAGCATGGGCACGAGGCCGTTCGA-CGAGCCGTTCGTGCCACGGATGTACGAG 18151 Query 222281 CCGCCGGCCCTCAGGT--TACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCA 222338 | || | | || | | || |||| || || || ||||| || ||||| Sbjct 18152 TTGGTCGCGCGGATGTTGTGCACGCTGACA--CCAATGCCGCCGGCCCACTTGGAGATGC 18209 Query 222339 TGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCA 222398 |||||| |||||| ||||| ||||||||| || ||||| ||||| | | |||| Sbjct 18210 AGGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCA 18269 Query 222399 GAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGT 222458 | || || ||||||| ||| | | | | |||||| |||||||| || | |||| Sbjct 18270 GGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGT 18329 Query 222459 GTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCC 222518 | || ||| ||| ||||| ||||||||||| | | | |||||| | | Sbjct 18330 GCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCT 18389 Query 222519 CGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGG 222578 ||| || | ||| | || ||| | ||| || | || ||| ||||| Sbjct 18390 TGTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCGCT---CAGCGACCTTGC 18446 Query 222579 AGCTGGAG---AGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAA 222635 | | | || |||||||| || || || |||||||| |||||||||| | |||| Sbjct 18447 CACCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAA 18506 Query 222636 AGTCTCTGCCGTG 222648 |||| | | |||| Sbjct 18507 AGTCGCGGTCGTG 18519 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 221030 TGTACAGAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTC 221089 || || ||||| | || | || | || | |||||| |||| |||||| | || | Sbjct 16925 TGCACTGAGCCGTGGTCGTGCAGGATCTGGTTACGCACCTCGGGCGTCCAGATGCCGAGC 16984 Query 221090 TCTTCCAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTC 221149 || ||| |||| | || || ||||||||| | ||| || || | ||||| | Sbjct 16985 TCGATGAGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGG 17044 Query 221150 CTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCC 221209 | | ||||| ||| | |||||||| ||||| |||||||||||| |||||||| || Sbjct 17045 CGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCG 17104 Query 221210 GTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCA 221252 || || || ||||| || || | |||||| |||||||| Sbjct 17105 GTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCA 17147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928716108552960