Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq18 123 7e-23 seq466 100 8e-16 >seq18 Length=52313 Score = 123 bits (136), Expect = 7e-23 Identities = 258/379 (68%), Gaps = 8/379 (2%) Strand=Plus/Plus Query 302490 GTCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTT-ATTTCTTACGG 302548 ||| || || || || || || || |||||||||| | | |||| ||| | |||| Sbjct 8613 GTCCATACCATCTTCACCATACAAAAACTGAATGATCTCGC-CTTGAGCATTGCGGACGG 8671 Query 302549 TCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAAC 302608 | ||| |||| |||| | ||||| |||| | ||||||||| || |||| Sbjct 8672 TACCATCGTAACGTGTCATCACCGACTCCATGGCTTTGACAAGACGACGCTGGATGTAAC 8731 Query 302609 CAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGA 302668 | ||| || || || || || |||||||| | ||| ||||||||||||| || |||| Sbjct 8732 CGGTTTCAGCAGTCTTGACGGCAGTATCAATCAAACCTTCACGACCACCCATGGCGTGGA 8791 Query 302669 AGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCT 302728 |||| | ||||| ||| || ||| | | | ||| | |||||||||||||| || Sbjct 8792 AGAAGAACTCTTGCGGGGTCAGTCCCTTCAAATACGAGTTTTCAACGAAACCACGACTCT 8851 Query 302729 CGGG--CGA-ATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 | || ||| ||| || ||| |||| || || || || | | || || | Sbjct 8852 CAGGACCGAGATCATC---CTTTCCGTAGTGAGGAAGAGTTCTTCGGTTGAATCCATAAG 8908 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTA 302845 | ||||||||||| || ||||||||||| |||| |||| ||| ||||| || || || | Sbjct 8909 GAATACGCTTTCCTTCGACGTTCTGCTGACCCACACACGCAATAATCTGGGAGATGTTAA 8968 Query 302846 AATCACTGCCCTTGGAGCC 302864 | | |||||||| || Sbjct 8969 TGTAAGATCCCTTGGAACC 8987 >seq466 Length=14624 Score = 100 bits (110), Expect = 8e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || |||| ||| || |||||||| || || | ||| |||||||| || || || Sbjct 11997 CCGTGCGAGATCAGACAGTCGCGCTCCATCTCTCCCATACGCAGACCACCTTCTCGCGCA 11938 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || || ||| ||||| || | Sbjct 11937 CGACCCTCCATGGGCTGGCGCGTCAGCATCGTCACGGGGCCGCGCGAGCGCGAGTGGATC 11878 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || || | |||||||||||||||||||||||||| | |||||||||||||| Sbjct 11877 TTGTCGTCGACCATATGCTTGAGACGCTGGTAGAACGTCGGACCGATGAAGAT 11825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471608581663308