Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq217 221 1e-52 >seq217 Length=20966 Score = 221 bits (244), Expect = 1e-52 Identities = 989/1536 (64%), Gaps = 62/1536 (4%) Strand=Plus/Plus Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || ||||| || |||| | || | || || || || | || || || ||| Sbjct 16994 TCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTAC 17053 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603 |||||| | ||||| ||||| | ||| |||||||| || || ||||| || || | ||| Sbjct 17054 ATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTCGACGCC 17113 Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTG 138663 |||||||| ||| | || || || || || | |||| || || | ||||| Sbjct 17114 GTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTG 17173 Query 138664 AGCGACGACCAGTCCCACAAATCGC---TAGGTTTTTTGTTCCACATATCGTACTGTAAC 138720 |||| | ||||||||| | || | || | | |||||| |||||||| || Sbjct 17174 AGCGCGGCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAG 17233 Query 138721 ATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAAC 138780 || ||| || |||| ||| ||||| |||| || ||| | ||| | | Sbjct 17234 ATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGC 17293 Query 138781 TCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAAT 138840 || | ||||| | ||| || |||| | || ||| || | || |||||| Sbjct 17294 TCCATCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCG 17353 Query 138841 CGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGC 138900 || |||||| ||||||| ||| || | | |||||||||| || || || ||| Sbjct 17354 CGTGCCTCGTCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGC 17413 Query 138901 ACGCCCACTCCGACAGGGCGATGGCGCAGATTTGA-CGCTTTTGCGGCTTCG---ATAGG 138956 ||||| | |||| ||||| |||||||| || |||| |||| ||| || || Sbjct 17414 ACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCT----CGGCCTCGGGGATCGG 17469 Query 138957 ATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTT 139016 || ||||| | ||||||| ||||| | || ||| ||| ||||| || | | | | Sbjct 17470 GTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGT-CGT 17528 Query 139017 TAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGA 139075 | | | | || ||| | || ||||||||| || ||||| ||| || Sbjct 17529 ACAGCTTCTTGAAGTCGAAGGTC------TTGTCGTCGT-----TC-ACAAACTTG--GA 17574 Query 139076 CACAA--ATCGAGGCTATGTTGCACACCGCCACTTCGTCGGG-GTCGCTGTATTCGACAA 139132 || || || || | |||||||||||| || |||||||| | || |||| |||| | Sbjct 17575 CAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACG-TGTACTCGAGCA 17633 Query 139133 TTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGT 139192 ||| || | || || | |||||| || | || || || || || |||| Sbjct 17634 CCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGT 17693 Query 139193 TACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGA 139252 |||| | || ||||| ||||| ||||| ||||| || || | || | ||| | || Sbjct 17694 TACACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCG 17753 Query 139253 ATTTGAACAAGTCC--CTA-GCTTGTAT----TTGACGCACGTAAAGTTCGTCGCGCTCG 139305 |||| || | || || | || ||| ||| || | | ||||||||| Sbjct 17754 C---GAACCAGAGCTGCTGCGCGCGGATCGTCTTG-CGCGCGC---GGCCCTCGCGCTCG 17806 Query 139306 TACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGG-CGTCAGAAAGATCGCGACACT 139363 |||| | ||| || | ||||| |||| |||| | | ||| | ||| | | || Sbjct 17807 TACTGGTGGTACAGCGCCTCGAACTCGT-CACCCCACGTCGTGT-AGAGACCCGGTGCCT 17864 Query 139364 TGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCG 139423 || || || | || ||| ||||||| |||| |||||| ||||||| ||||| | Sbjct 17865 CGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGG 17924 Query 139424 GAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTT-ATCTTCCGAACCCATGTTACGT 139482 ||||||||| ||| | | || ||| || || | | || || || || | | | Sbjct 17925 GAATCCACATCGCGTAGAACAGATCACGAGCGCGGTGCAGCT--CGTTGCCGTGGTTCTT 17982 Query 139483 -TTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGC 139541 || | || ||||| || || | ||| |||||||| || || ||||| || || | | Sbjct 17983 CTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGA 18042 Query 139542 GCCTTTCCGTTTGCC---ACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAA 139598 ||| || || ||||| ||| ||||| || | || | | | ||||| ||||||| Sbjct 18043 GCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAG 18102 Query 139599 CATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCG 139658 ||| ||| | || ||| ||| | ||||| |||| ||||||| |||| || || Sbjct 18103 CATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCACGGATGTACGAGTTGGTCGCGCG 18162 Query 139659 GACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCG 139718 || || || || ||| || || |||||| | | ||||| || | |||| | || Sbjct 18163 GATGTTGTGCACGCTGACACCAATGCCGCCGGCCCACTTGGAGATGCAGGCGCACT-GCT 18221 Query 139719 TAAT-GTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACG 139777 | | || || || || || || |||||||| ||| | || ||| ||||| |||| Sbjct 18222 TGAGCGTGTCATAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACG 18281 Query 139778 AAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTT 139837 | || ||||| | ||||||||| ||||| || || ||||||||||||| | Sbjct 18282 ACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGC 18341 Query 139838 GTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATC--CCTTCCGTGGATACC 139895 || |||||| | |||||||| |||| ||| | || || ||| |||||| || Sbjct 18342 TTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTT--GTGGATGCC 18399 Query 139896 GACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAttttttt 139955 ||||| ||| |||| | ||| || || || || || ||| ||| ||| Sbjct 18400 GACAGCGACGCGCAGAATCATCTGCTGCGGGCGCTCAGCGACCTTGCCACCGACGCGCAG 18459 Query 139956 CAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTA 139991 || || ||||| || |||||| |||||||||| Sbjct 18460 GAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTA 18495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449835266687520