Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq217 239 6e-58 seq45 131 2e-25 >seq217 Length=20966 Score = 239 bits (264), Expect = 6e-58 Identities = 579/861 (67%), Gaps = 17/861 (2%) Strand=Plus/Plus Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 ||||| || | |||| ||||| ||| ||| |||| |||||||| |||||||| Sbjct 17660 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACACGAGTCCTTGTACAGCATGTAC 17719 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCG-GCTGGTA 111434 ||||| |||||||| |||| || | ||| || || ||| | | | ||| || | | Sbjct 17720 GGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATC 17779 Query 111435 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 111494 | ||| || || ||||| |||||||| ||| || || || ||||| |||| Sbjct 17780 GTCTTGCGC--GCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCAC 17837 Query 111495 CCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCT 111553 || || ||| | ||||||| ||||||| || || ||||| || ||| | || Sbjct 17838 CCCACGTCGT-GTAGAGACCCGGTGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTG 17896 Query 111554 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CA 111612 ||||||| ||||||||||| || || |||||||||| | | || ||||| | | | Sbjct 17897 GCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAACAGATCACGAGCG 17956 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGCGT 111671 | | || || ||| || ||||| || | | || |||||||| | ||| || |||| Sbjct 17957 CGGTGCAGCT-CGTTGCCGTGGTTCT-TCTTGAGGTCGAGGAACTCGAAGATGTCGGCGT 18014 Query 111672 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACAT 111728 |||| ||||| ||||| | |||| || ||||| || ||| || | |||| |||| Sbjct 18015 GCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACAT 18074 Query 111729 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 111788 | ||||| ||| |||| || ||||| ||||| || | | || | || || || | Sbjct 18075 AACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCG 18134 Query 111789 TCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 111846 | || || || ||||| || | || | | | || | | | ||||| || || Sbjct 18135 TGCCACGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACGCTGACACCAATGCCGCC 18192 Query 111847 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 111906 |||||||| ||||| || |||| | | || || ||||||| || | ||| ||||| Sbjct 18193 GGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTC 18252 Query 111907 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 111966 ||||| |||||| |||||||| |||| |||||| | || || || || ||||| Sbjct 18253 GTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAA 18312 Query 111967 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 112026 || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | | Sbjct 18313 CAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGC 18372 Query 112027 AGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGT 112086 | || ||||| | | ||||||||||| ||||| |||| | ||| | ||| ||| Sbjct 18373 GGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCG 18432 Query 112087 TTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAA 112146 || || ||||| ||| || | || || |||||| || || |||| ||||| Sbjct 18433 CTCAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAA 18492 Query 112147 GTAACCAAAATCATAGTCCCG 112167 ||| | | ||| |||| || Sbjct 18493 GTAGTCGTACTCAAAGTCGCG 18513 >seq45 Length=43062 Score = 131 bits (144), Expect = 2e-25 Identities = 382/578 (66%), Gaps = 18/578 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 42119 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 42060 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACG 122489 ||||||| || ||| | | || | || ||||| | |||| | |||||| || Sbjct 42059 CAGTCAAACGGGTTCGACACCTTGTAGATCT-TGGCAACGCCAAGCGCGTGGAGGAGGCG 42001 Query 122490 ATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 ||| | || | |||||||||||| | |||| ||||||||||||||||| | Sbjct 42000 ATCGGCGCAGA-ACTCAATGTACTGGCACATGAGAGACGAGTTCATACCGATGAGCTCCA 41942 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| | |||| || |||| | ||||| ||| | || || || | ||| ||| Sbjct 41941 CCGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCGACGGCATCGCGAATGATCTCGT 41882 Query 122609 GGAT---AGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAA 122662 |||| || || | || || | || | |||| || | || | || | Sbjct 41881 GGATGCGAGACTCAG----GGAGCTTGTTGGCGAG--CTTGGAGTACAGCAGGCACGCGA 41828 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || |||||||||||| || || || || || || || ||||||| || || |||| Sbjct 41827 AGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 41768 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 | || || |||||||| | ||| | |||| |||||| || || ||||||||||| |||| Sbjct 41767 TAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCT 41708 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAA-GGAGCGAGACTTTGCATCAAACCAT 122841 | || || ||||| | | || |||||||| | ||| | | | || |||| Sbjct 41707 CGACGGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGC-GCGAGTCGCACCAC 41649 Query 122842 TTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAAC 122901 || | ||||| | |||||||||| | ||| || | || | |||||| || | Sbjct 41648 TTGAGCGCCCAGTGGGCCTTCTTCTGCACACAAGGGATCGTCTCGATGGCGCGAAGAAGG 41589 Query 122902 TGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939 || ||||| || | ||||| ||||| |||| || Sbjct 41588 TGGTTCTTCTCGGTCTGGTCCTTGATGTACGTGTCGAT 41551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627944986166400