Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq217 264 1e-65 seq45 201 1e-46 seq73 89.7 6e-13 >seq217 Length=20966 Score = 264 bits (292), Expect = 1e-65 Identities = 770/1162 (66%), Gaps = 44/1162 (4%) Strand=Plus/Plus Query 118485 GCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGA 118542 ||||||||| ||||||||| || | || | || || | ||||||||||| || | Sbjct 17357 GCCTCGTCGCTCTCAAACGCGTAGCC--CATGAGGATGAACGCGTCCGCGAGACCCTGCA 17414 Query 118543 CACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG---GGAT 118599 | |||| ||| || ||||| || | || || |||| | ||| ||| | || | Sbjct 17415 CGCCGATGCCGATCGGGCGGTGGCGCAGGTTG--CTTC-GCTCGGCCTCGGGGATCGGGT 17471 Query 118600 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 118659 | | || | ||||| ||| | || || || ||||| ||||| ||||| || | | Sbjct 17472 AGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACA 17531 Query 118660 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACG 118719 |||| | | | || || | | || || || ||| |||| | || ||||| |||| Sbjct 17532 GCTTCTTGAAGTCGAAGGTCT---TGTCGTCGTTCACAAACTTGGACAGCGCGATGGACG 17588 Query 118720 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGT 118779 | || || ||||| | | ||| || |||||||| | | || ||| | || Sbjct 17589 CGAGGTTGCACACCGCGACCTCGTCGGGCGACGTGTACTCGAGCACCTCGCAGCAGAGGT 17648 Query 118780 TTGAACTCTTA---ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 118836 | ||| || ||||| | ||||| || || ||||| |||||||| |||| Sbjct 17649 TG---CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTACACGAGTCCT 17705 Query 118837 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 118896 |||| |||||||| ||||| |||||||| | || |||| ||| || || ||||| Sbjct 17706 TGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGA--- 17762 Query 118897 CGGCAGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCGTACTTTGTGTAGAG 118951 || |||| || | | | | ||| || || ||||| |||||||| ||| || Sbjct 17763 --GCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAG 17820 Query 118952 GGCTTCAAACTCTTCACCC-ACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010 || || ||||| |||||| ||| | | | |||| || ||||||| | |||||||| | Sbjct 17821 CGCCTCGAACTCGTCACCCCACGTCGTGT-AGAGACCCGGTGCCTCGTTCGGGCAGAACA 17879 Query 119011 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 119070 | ||| | || ||||||| |||||||||||||| || || ||||| | ||| Sbjct 17880 GGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGT 17939 Query 119071 AGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 119129 |||| ||||| ||| ||| || || | | || || || | || | || Sbjct 17940 AGAACAGATCACGAGCGCGGTGCAGCT-CGTTGCCGTGGTTCTTCTTGAGGTCGAGGAAC 17998 Query 119130 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGA 119186 || | ||| || ||||||||||| || || |||| ||||| || ||||| || | Sbjct 17999 TCGAAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCG 18058 Query 119187 CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCA 119246 ||| |||| | ||||| | ||| ||| |||| || || || ||||| || | || || Sbjct 18059 CCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCG 18118 Query 119247 TCGGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGT 119304 | || ||| || || || || || ||||| || | || | || | ||| | | Sbjct 18119 TTCGACGAGCCGTTCGTGCCACGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACGC 18176 Query 119305 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 119364 | |||||| || || |||||||| ||||| ||||||| | |||| || | |||| Sbjct 18177 TGACACCAATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGA 18236 Query 119365 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGG 119424 | || ||||||||||| |||| | |||| |||||||| ||||| || || | | Sbjct 18237 TGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCG 18296 Query 119425 GTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGT 119484 | || || |||||||| || || || |||||||| |||| | | ||| ||||| | | Sbjct 18297 GCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACT 18356 Query 119485 CGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAA 119544 |||| ||||| | ||||| ||||| | | ||| || |||| | ||| |||| || Sbjct 18357 CGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAA 18416 Query 119545 ACATGTATTG-GGGTGTTTCCATC-AGGATACCATCGAGCCTCTGGAGGTAACTCTTCTC 119602 ||| | || ||| | | || | | | ||| ||| | | ||||||| |||||| Sbjct 18417 TCATCTGCTGCGGGCGCT--CAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCTC 18474 Query 119603 CAAGGTCTTGAGACCAAAATAG 119624 | ||||||| ||||| ||| Sbjct 18475 GAGCGTCTTGAAGCCAAAGTAG 18496 >seq45 Length=43062 Score = 201 bits (222), Expect = 1e-46 Identities = 401/584 (69%), Gaps = 24/584 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 42119 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 42060 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCA-CTCCAATCTGTTTGAGGAGACG 129846 | ||||| |||||| || | || ||||| | |||| | | |||||| || Sbjct 42059 CAGTCAAACGGGTTCGACACCTTGTAGATCT-TGGCAACGCCAAGCGCGTGGAGGAGGCG 42001 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | | | |||||||||||| |||| ||||||||||||||||| | Sbjct 42000 ATCGGCGCAGAACTCAATGTACTGGCACATGAGAGACGAGTTCATACCGATGAGCTCCAC 41941 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| |||| || |||| ||||||| || | || || || || | ||| |||| Sbjct 41940 CGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCGACGGCATCGCGAATGATCTCGTG 41881 Query 129967 AATG---GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCA---- 130018 ||| | ||| | | || | | ||| || |||| |||| | | |||| Sbjct 41880 GATGCGAGACTCAGGG--AGCTTGTTGGCG---AG-CTTG--GAGTACAGCAGGCACGCG 41829 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || |||||||||||||||||| |||||||| || |||||||||| || || ||| Sbjct 41828 AAGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGC 41769 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 || || || |||||||| | |||||| || | || || ||||| ||||||||||| ||| Sbjct 41768 ATAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCC 41709 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAA---GGAGCGGGACTTTGTATCAAAC 130195 || || |||||||| | || |||||| || || || |||| | | || || Sbjct 41708 TCGACGGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGC---GAGTCGCAC 41652 Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 130255 ||||| | |||||| || ||||| |||| | ||| |||| |||| ||| || || Sbjct 41651 CACTTGAGCGCCCAGTGGGCCTTCTTCTGCACACAAGGGATCGTCTCGATGGCGCGAAGA 41592 Query 130256 AGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 || | ||||| || | | || ||||||||| | || ||||| Sbjct 41591 AGGTGGTTCTTCTCGGTCTGGTCCTTGATGTACGTGTCGATGAG 41548 >seq73 Length=35360 Score = 89.7 bits (98), Expect = 6e-13 Identities = 281/427 (66%), Gaps = 15/427 (4%) Strand=Plus/Plus Query 14050 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 14109 ||| || |||| |||||| || ||||| || || || | ||| | ||| || || || | Sbjct 15415 CACAGTAATCTGACGATCGAAACGACCCGGACGAAGAATGGCCTTGTCGAGAATGTCGAC 15474 Query 14110 GCGGTTCGTCGCCGCGATGACAACGATGCCCGT-CTCGTTATCAAAGCCATCCATCTCAG 14168 |||||||| |||| | ||||| | |||| |||| | || ||| |||||||| | Sbjct 15475 ACGGTTCGTACCCGCAAGCACAACCACGCCCTCGCTCGAGTTGAA-GCCGTCCATCTC-G 15532 Query 14169 TCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCAC----CCGC 14223 | || || || |||| || | || || || ||||| || || | || || Sbjct 15533 ACGAGCAGCTGGTTGAGTGTGTTCTCTCGCTCGTCATTACCAC-CAGAGAACGTTCCCTT 15591 Query 14224 ACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTC 14283 ||| ||| | |||| || || |||||||||||||| || || || || ||| | Sbjct 15592 ACTACGTGCACGAGCGACAGCATCGATTTCATCGATGAAGACAATGCACGGAGAGTTTGC 15651 Query 14284 ACGGGCAACTTCA---AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTC 14340 || | ||||| || | ||| ||||| | | | ||| ||||| ||||||||||| Sbjct 15652 CCG---AGCTTCACGGAACAAATCACGCACACGCGACGGACCCACACCGACAAACATCTC 15708 Query 14341 CACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCG 14400 | |||| | | | ||| || ||| || || ||| |||||| || | || Sbjct 15709 AATGAAATCCGAGCCCGAAATACTGAAGAATGGCACACTAGCTTCACCGGCCGTTGCCTT 15768 Query 14401 GGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCT 14460 || || |||||||| || || || || || | || | |||||| |||||| | Sbjct 15769 CGCAAGCAGGGTCTTACCAGTGCCCGGAGGTCCGACAAGCAAGGCACCCTTCGGGATCTT 15828 Query 14461 GGCACCA 14467 ||||||| Sbjct 15829 GGCACCA 15835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618349515803040