Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq217 219 5e-52 seq45 149 7e-31 seq44 95.1 1e-14 >seq217 Length=20966 Score = 219 bits (242), Expect = 5e-52 Identities = 502/745 (67%), Gaps = 13/745 (2%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| | ||||||| || |||| || || | | ||||| || | | Sbjct 18430 CCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCACAAGCATGACATCGACGCCGC 18371 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||||| | ||||| ||| | | |||| ||||| || || || || || Sbjct 18370 GCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGACGCTGTT 18311 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || | || || |||| |||||||| |||||| ||||| || Sbjct 18310 CAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCGCCATGAAGGACGA 18251 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | || ||||||| || || | | |||| || ||||| |||||||| || Sbjct 18250 CTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCCGG 18191 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACA 104518 || ||||| | | | || | | | || | || |||||| | || || || Sbjct 18190 CGGCATTGGTGTCAGCGTGCACAACATCCGCGCGACCAA--CTCGTACATCCGTGGCACG 18133 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || || | || | | || ||||| ||||| || |||| ||| ||||| ||| Sbjct 18132 AACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCAACGACACGGCGCGTTAT 18073 Query 104579 GTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 || |||| | ||| | || ||||| || |||| | ||||| ||||| |||||| Sbjct 18072 GTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTATCTCGAGCCGTGGCAC 18013 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 || || ||| | |||||||| || | ||||| || ||||| | | | | || Sbjct 18012 GCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCAACGAGCTG-CACCGCGC 17954 Query 104696 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 || ||||| |||| ||| | |||||||| ||||||||||||||| | ||||||| | Sbjct 17953 TCGTGATCTGTTCTACGCGATGTGGATTCCCGATCTCTTCATGAAGCGCGTTGAGGCCAA 17894 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT-GGGTG 104813 ||| | ||| || || || || || ||||||| ||||||| | | | ||| ||||| Sbjct 17893 CGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCACCGGGTCTCTAC-ACGACGTGGGGTG 17835 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGC 104873 | ||||| || || || ||| |||||||| || || || ||| |||| | | Sbjct 17834 ACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCGAGGGCCGCGCGCGCAAGACGATCC 17775 Query 104874 CAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932 || || | | | ||| || || ||| |||| || | |||||| || || || ||| Sbjct 17774 GCGC-GCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCGAGACGGGCACGCCGTAC 17716 Query 104933 ATGCTTTACAAAGACGCCTGTAACC 104957 ||||| ||||| ||| | ||||||| Sbjct 17715 ATGCTGTACAAGGACTCGTGTAACC 17691 >seq45 Length=43062 Score = 149 bits (164), Expect = 7e-31 Identities = 199/274 (73%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||| | |||||||| || || || |||||| | Sbjct 41548 CTCATCGACACGTACATCAAGGACCAGACCGAGAAGAACCACCTTCTTCGCGCCATCGAG 41607 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 || | || ||| | || ||||| || | ||||| | ||||||| || | | || Sbjct 41608 ACGATCCCTTGTGTGCAGAAGAAGGCCCACTGGGCGCTCAAGTGGTGCGACTCGC-GCCG 41666 Query 94792 CGTTCCTTT-GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 || | || || ||||| || |||| || || || ||||| ||||||||||| || Sbjct 41667 CGCCGCGTTCGCCGAGCGTATCGTCGCGTTCGCTGCCGTCGAGGGCATCTTCTTCTCGGG 41726 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 || |||||| |||| | |||||||||||||| || || ||||| || ||| ||||||| Sbjct 41727 CTCGTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTTATGCCTGGCCTCAGCTTCTC 41786 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||| ||||| ||||||||||| |||||| Sbjct 41787 GAACGAGCTCATCTCGCGTGACGAGGGTCTCCAC 41820 >seq44 Length=43120 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 169312 GAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGAAGACACC 169371 |||||| | | | | || ||||| || ||| ||| ||||| || ||||||||||| Sbjct 27379 GAGCTGCGCGTCCGTCGCGTCGCGCACGTTCAGCACCTTGCCACGCAGCGGGAAGACACC 27438 Query 169372 GTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACC 169431 ||| | || || || ||||| | ||| |||||||||||||| | ||| |||||||| || Sbjct 27439 GTACTTGTCGCGTCCGACGACCGCGAGTCCCGCGACTGCGAGCGCCTTGGCCGAGTCGCC 27498 Query 169432 CTCGGTGACGATGAGCG 169448 || |||| ||| |||| Sbjct 27499 TTCCGTGAGGATCAGCG 27515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583179989216160