Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3528 199 1e-45 seq529 141 3e-28 seq10009 86.0 2e-11 >seq3528 Length=2126 Score = 199 bits (220), Expect = 1e-45 Identities = 848/1330 (64%), Gaps = 16/1330 (1%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | || || || || || ||||| | ||| ||||| || || || || || Sbjct 2082 GGCATTGATCTCGGCACGACGTACTCGTGTGTCGGTGTGTGGCAGAACGACCGAGTGGAG 2023 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || || || || ||| | || ||||| || ||||| || || || || || Sbjct 2022 ATCATCGCGAACGACCAGGGCAACCGCACGACGCCGTCGTACGTGGCGTTCACGGACACG 1963 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| |||| || || |||| || || || | || || | | |||||||| Sbjct 1962 GAGCGTCTGATCGGCGACGCTGCGAAGAACCAGGTCGCGATGAACGCCAGCAATACGGTC 1903 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 || || || ||||| || || || | | || || ||| | || || || | Sbjct 1902 TTCGACGCCAAGCGCCTGATCGGACGCAAGTTCTCGGACGCAGTCGTGCAGTCGGACATG 1843 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAA 349504 || || | || || | || || | || ||||| || || | || || Sbjct 1842 AAGCACTGGCCGTTCAAAGTGGTCGCCGGGTCAGGAGATAAGCCGCAGATCGTCGTCGAG 1783 Query 349505 TATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAA 349564 | || || || | || || ||||| || || || || ||||| | || Sbjct 1782 TTCAAGGGGGAGCGCAAGACGTTCCAGCCCGAGGAGATCTCGTCCATGGTGCTGACCAAG 1723 Query 349565 ATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTA 349624 |||||||| || || || || || | || || || | | || || || || || Sbjct 1722 ATGAAGGAGATCGCCGAGGCGTACCTGGGCACGACGGTGAAGAACGCGGTGATCACGGTG 1663 Query 349625 CCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGG 349684 || || || ||||| || |||||||| ||||| ||| || |||| || || || Sbjct 1662 CCGGCGTACTTTAACGACTCCCAGCGTCAGGCAACGCGAGACGCCGGCACGATCGCTGGT 1603 Query 349685 TTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGAT 349744 | || || || | || || || || || || |||||||| || || ||||| || || Sbjct 1602 CTCAACGTGCTGCGCATCATCAACGAGCCAACGGCTGCAGCGATCGCGTATGGACTGGAC 1543 Query 349745 AAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGAT 349804 || | | | | | || ||| | || || || ||| | || ||||| || ||||| Sbjct 1542 AAGAAGGGCGGC---GAGCGCAATGTGCTGATCTTCGATCTCGGCGGTGGCACGTTTGAC 1486 Query 349805 GTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACA 349864 || || | || | | |||||||| || || || || || || ||||| ||||| || Sbjct 1485 GTGTCGTTGCTGTCGATCGAAGAGGGCATCTTCGAGGTGAAGGCGACTGCGGGTGACACG 1426 Query 349865 CATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAG 349924 || || || || ||||| ||||| ||||||||||| | || || || || ||| Sbjct 1425 CACCTCGGCGGCGAAGACTTTGACAATCGTCTCGTGGACTACTTCGTGGCCGAGTTCAAG 1366 Query 349925 CGTCAAGC-TAAAATTGATATTGGAGAT--AATCCTAGAGCAATGCGTCGCCTAAGAACT 349981 || ||||| | ||| | || | || | | | |||| ||||| | || Sbjct 1365 CG-CAAGCACCGCAAGGATCT--GACGTCGAACCAGCGCTCGCTGCGACGCCTTCGCACA 1309 Query 349982 GCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGAT 350041 || || || ||||| ||||| | || || || | || ||| | || || ||||| Sbjct 1308 GCATGCGAGCGTGCCAAGCGGACGTTGTCGTCGTCGACGCAAGCGCACATCGAGATTGAC 1249 Query 350042 TCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTA 350101 || || ||| |||| || ||| | || || ||||| || || || || | Sbjct 1248 TCGCTGTTTGACGGCATCGACTTCAACAGCACGATCACGCGTGCGCGCTTCGAGGACATG 1189 Query 350102 TGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAA 350159 ||| || || ||| ||| || ||||| || ||||| |||||||| || || | Sbjct 1188 TGTGCCGA-CTATTT-CCGCAAGACGATGGAGCCCGTGGAGAAAGTATTGGTGGACGCCA 1131 Query 350160 AAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAA 350219 | || ||||| | ||| | | || || || || || ||||| || || ||||| || | Sbjct 1130 AGATCTCCAAGAGCCAGGTGCACGAGGTGGTCTTGGTGGGTGGCTCGACGCGTATCCCGA 1071 Query 350220 AAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATC 350279 | || || ||| | || || || ||||| || ||||| || || | | || || |||| Sbjct 1070 AGGTGCAGCAGCTGCTGTCGGACTTTTTCAACGGCAAGGAGCCGTGCAAGTCGATCAATC 1011 Query 350280 CAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGG---AAATA 350336 | || || || || || | ||||| || || |||||| | ||||| | || | | Sbjct 1010 CGGACGAGGCCGTGGCGTTCGGTGCCGCCGTGCAGGCAGCCATTTTGACGGGCGAGGACA 951 Query 350337 AGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAG 350396 || || || | | |||||||| || || ||||| || || || ||||| || | | Sbjct 950 AGTCGTCCAAGCTACAGGATCTATTGCTGCTGGATGTGACGCCGCTGTCGCTGGGCCTCG 891 Query 350397 AAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAA 350456 | || | || | || ||||| || || || | || | | | || || || || | Sbjct 890 AGACCGCGGGCGGTGTCATGACGACGCTGATCCCGCGCAACACTGCAGTGCCGACGAAGA 831 Query 350457 AGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTG 350516 |||| || || || || || | ||| || || ||||| | || || ||||| |||| Sbjct 830 AGTCGCAGACGTTCTCGACGTATGCGGACAACCAGCCTGGCGTCTTGATCCAAGTGTTTG 771 Query 350517 AAGGTGAACG 350526 | || || || Sbjct 770 AGGGCGAGCG 761 >seq529 Length=13464 Score = 141 bits (156), Expect = 3e-28 Identities = 911/1447 (63%), Gaps = 22/1447 (2%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || |||||| | ||||| || || || || || | || ||||| || || || || || Sbjct 2503 GGTATCGATCTCGGTACGACCTACTCGTGCGTCGGCGTGTGGCAGAACGACCGCGTCGAG 2562 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || || || |||||| | || ||||| || ||||| || || || || || Sbjct 2563 ATCATCGCCAACGACCAGGGTAACCGCACGACGCCGTCGTACGTCGCCTTCACGGACACG 2622 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| | || |||||| | || || || || | || || | | || ||||| Sbjct 2623 GAGCGTCTCATCGGTGATGCCGCTAAGAACCAGGTCGCGATGAACGCCACCAACACGGTG 2682 Query 349385 TTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATCTGATCT 349443 || || || ||||| || ||||| | ||||| | ||| || || || || | Sbjct 2683 TTCGACGCCAAGCGTCTCATTGGCCGCAAGTTCAGC-GACCCGACTGTCCAGTCGGACAT 2741 Query 349444 AAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGA 349503 || || | ||||| || || || | ||||| || || || ||| | Sbjct 2742 CAAGCACTGGCCTTTCACGGTGTCGCCGGGCGCTGGTGACAAGCCGCAGATCACGGTCCA 2801 Query 349504 ATATAAAGGTGAA-CAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 | || || || | || || || || || || || || || ||||| | | | Sbjct 2802 GTTCAAGGGCGAGTCGAAGACC-TTCCAGCCGGAGGAGATCTCGTCGATGGTCCTCATCA 2860 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||| || ||||||| || | | || | || | | || || ||||| | Sbjct 2861 AGATGCGTGAGGTTGCTGAGGCCTTCATCGGCAAGGAGGTCAAGAACGCCGTCATTACGG 2920 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || ||||| || || || | |||||| || || || |||||||| |||||| | Sbjct 2921 TCCCGGCCTACTTCAACGACTCGCAGCGTCAGGCCACGAAGGATGCTGGTGCCATTGCCG 2980 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || || || | || || || || || || ||||| || || || || || |||| Sbjct 2981 GCCTCAACGTGCTCCGTATCATCAACGAGCCGACGGCTGCCGCTATCGCCTACGGTCTTG 3040 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | | | || || | || || || ||| | ||||| ||||| || | Sbjct 3041 ACAAGAAGGGCGGT---GAGCGCAACGTGCTCATCTTCGATCTTGGTGGCGGTACCTTCG 3097 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || | |||| ||||| || || || || || || || |||||||| | Sbjct 3098 ATGTGTCGCTCCTGAGCATTGAGGAGGGTATCTTCGAGGTCAAGGCTACGGCTGGTGACA 3157 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922 | ||||||||||| || ||||| ||||| || ||||| || || || || | Sbjct 3158 CGCATCTTGGTGGTGAGGATTTCGATAACCGCCTCGTCGACCACTTCACGGCCGAGTTCA 3217 Query 349923 AGCGTCAAGC-TAAAATTGATAT-TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAAC 349980 |||| ||||| | || | ||| || | | || | ||||| || | || Sbjct 3218 AGCG-CAAGCACCGCAAGGACCTCACGAG-CAACCAGCGTGCTCTCCGTCGTCTGCGCAC 3275 Query 349981 TGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGA 350040 || || || || |||||||| | | || || | |||| ||| || || ||||| Sbjct 3276 GGCCTGCGAGCGCGCTAAGCGCACGCTCTCGTCGTCGGCCCAGGCCTACATCGAGATTGA 3335 Query 350041 TTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATT 350100 || || ||||| || ||| || | || || |||||||| || || || | Sbjct 3336 CTCGCTCTTCGATGGTGTCGACTTCAACTCGACCATCACGCGTGCTCGTTTCGAGGACCT 3395 Query 350101 ATGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCA 350158 || ||| || || ||| || ||||| ||||| || || || | || || Sbjct 3396 CTGCGCGGA-CTACTT-CCGCAAGACGATGGAGCCTGTTGAGAAGGTGCTCCGTGACGCC 3453 Query 350159 AAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCA 350218 || | || || | ||| | | || || || | || ||||| || || ||||| || Sbjct 3454 AAGCTCTCGAAGAGCCAGGTGCACGAGGTTGTCCTTGTCGGTGGCTCGACCCGTATCCCG 3513 Query 350219 AAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAAT 350278 || || || ||| | || || || || || || ||||| || || | | || || || Sbjct 3514 AAGGTCCAGCAGCTCCTGTCGGACTTCTTCAACGGCAAGGAGCCGTGCAAGTCGATCAAC 3573 Query 350279 CCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT-TTTATCTGGAAATAA 350337 || ||||| |||||||| | ||||| | || ||||| |||| | | | | || | Sbjct 3574 CCCGATGAGGCTGTTGCCTTCGGTGCCACGGTCCAGGCTGCTATCCTCAGCGGCAACGAC 3633 Query 350338 GAGTTCTAAAA--TTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTA 350395 ||| | || | | ||||| | || || ||||| || || || ||||| || | Sbjct 3634 CAGTCGGAGAAGCTCCAGGATCTGCTCCTCCTCGATGTGACCCCGCTGTCGCTCGGTCTC 3693 Query 350396 GAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAA 350455 || || | |||| || ||||| || || || | || | || || || || || Sbjct 3694 GAGACGGCCGGTGGTGTCATGACGACGCTGATCCCGCGCAACACGACGGTGCCGACCAAG 3753 Query 350456 AAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTT 350515 ||| | || || || || || | || || || ||||| | || || || || || Sbjct 3754 AAGACGCAGACGTTCTCGACGTACGCGGACAACCAGCCTGGTGTGCTTATCCAGGTCTTC 3813 Query 350516 GAAGGTGAACGTGCTCG--CACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTG 350573 || ||||| | ||||| || || || || || || | || | ||| || Sbjct 3814 GAGGGTGA--GCGCTCGATGACGCGCGACAACAACCTCCTCGGCAAGTTCAACCTCGATG 3871 Query 350574 AAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAA 350633 || || || ||||| | || || || ||||| || || | ||||| |||||| | | Sbjct 3872 GTATCCCGCCGATGCCGCGTGGTGTGCCGCAGATCGACGTGACGTTCGACATTGATGCCA 3931 Query 350634 ATGGTAT 350640 | ||||| Sbjct 3932 ACGGTAT 3938 >seq10009 Length=351 Score = 86.0 bits (94), Expect = 2e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | |||||||||||||||||||||||||| |||| | Sbjct 197 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTGGACCGC 256 Query 74548 TCGGGCA 74554 ||||||| Sbjct 257 TCGGGCA 263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515039213040452