Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq217 349 4e-91 seq45 167 3e-36 seq44 143 3e-29 seq179 125 8e-24 seq440 93.3 5e-14 >seq217 Length=20966 Score = 349 bits (386), Expect = 4e-91 Identities = 523/729 (72%), Gaps = 18/729 (2%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| | ||| |||| | ||| |||||||| ||||| || ||||||||| Sbjct 18366 GAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGACGCTGTTCAAC 18307 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || ||| | ||| ||| ||||| ||||||||| | || |||||||| |||||| Sbjct 18306 GCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCGCCATGAAGGACGACTCG 18247 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 ||||| |||||||| || ||||||||| |||| ||| ||||||||||||| | || || Sbjct 18246 ATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCCGGCGGC 18187 Query 53423 ATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 || ||| || | ||| | ||| |||| |||| | | | ||| || |||||||| Sbjct 18186 ATTGGTGTCAGCGTGCAC-AACATCCGCGCGACCAACTCGTACATCCGTGGCACGAACGG 18128 Query 53482 CGTCGCCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | ||| ||| || ||||||| ||||| ||||| |||||| ||||||| || || || Sbjct 18127 C-TCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCAACGACACGGCGCGTTATGTGG 18069 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 | |||||||| || ||||||||||| |||||||| || || ||||||||||||||||||| Sbjct 18068 ATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTATCTCGAGCCGTGGCACGCCG 18009 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC---C 53657 |||| | ||||| ||||| || ||| || || |||| | ||| | || | Sbjct 18008 ACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCAACGA---GCTGCACCGCGCTC 17952 Query 53658 GTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716 |||| ||||| ||| || |||||||||| || ||||||||| | || ||| || Sbjct 17951 GTGATCTGTTCTAC-GCGATGTGGATTCCCGATCTCTTCATGAAGCGCGTTGAGGCCAAC 17893 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC--CAGGGTGTCTACGGTG 53774 | |||||| |||| | |||||||||||| || || ||| || | || |||| Sbjct 17892 GGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCACCGGGTCTCTACACGACGTGG--GGTG 17835 Query 53775 AGGAGTTTAACGAGATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTC 53833 | ||||| | | | |||| | ||||| || | |||||||| |||| | || Sbjct 17834 ACGAGTTCGAGGCGCTGTACCACCAGTACG-AGCGCGAGGGCCGCGCGCGCAAGACGATC 17776 Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893 |||| || | ||| || |||||| || ||| | |||||||| ||||||||| Sbjct 17775 CGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCGAGACGGGCACGCCGTAC 17716 Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAA 53953 ||| |||||||| ||| ||| ||| |||||| ||||| ||||| ||| Sbjct 17715 ATGCTGTACAAGGACTCGTGTAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATCCGC 17656 Query 53954 TCGAGCAAC 53962 ||||||||| Sbjct 17655 TCGAGCAAC 17647 Score = 122 bits (134), Expect = 1e-22 Identities = 126/164 (77%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| ||||| | ||||| ||||| || |||||||| || |||||| | Sbjct 17151 GGCGTGCGCAACTCGCTGCTGCTCGCGCCGATGCCGACGGCGTCGACCGCGCAGATCCTC 17092 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||||||| || ||||||||| |||||||||||| ||| ||||| || ||| Sbjct 17091 GGCAACAACGAGTCGATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTTGCA 17032 Query 55598 GGTGAGTTTGTCATGATC---AACAAGCACCTCGTCAAGGACCT 55638 || |||| ||| |||| |||||| |||| | ||||| || Sbjct 17031 GGCGAGT---TCACGATCGTGAACAAGTACCTGATGAAGGAGCT 16991 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 55855 CAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTA 55914 |||| ||| || |||||||| |||| |||||||||||| |||||||||||||||||||| Sbjct 16755 CAAGCTGACGTCCATGCACTTCTACGCGTGGAAGAAGGGTCTCAAGACGGGTATGTACTA 16696 Query 55915 TCTGCGGACCCGCGCCAAGGCCAAGGCG 55942 ||||| | ||| | |||||| | ||| Sbjct 16695 CCTGCGCAGCCGACCGAAGGCCGATGCG 16668 >seq45 Length=43062 Score = 167 bits (184), Expect = 3e-36 Identities = 337/490 (69%), Gaps = 9/490 (2%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 |||||||||||||| || |||||||| | ||| ||||| | ||||| || || |||| Sbjct 41777 AGGCCAGGCATAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAG 41718 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA--CGGTGCATCGGAAG 74922 |||||||| ||||| || || ||||| | || | ||||| ||| || || || Sbjct 41717 AAGATGCCCTCGACGGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCGAG 41658 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTG-ACCGCAGGGACAGTATCGATCGC 74980 || ||| | | ||||| | || ||| | || || ||||| || ||||| || Sbjct 41657 TCGCACCACTTGAGCGCCCAGTGGGC-CTTCTTCTGCACACAAGGGATCGTCTCGATGGC 41599 Query 74981 TTGGAAGAGGCTTG-CCTTCTC-TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAG 75038 ||||| | | | |||||| || || ||||||| | | |||| || | || ||| Sbjct 41598 -GCGAAGAAGGTGGTTCTTCTCGGTCTGG-TCCTTGATGTACGTGTCGATGAGCAGCGAG 41541 Query 75039 TACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCT 75098 ||| |||||| || || ||| | |||| | ||||||| | |||||||| Sbjct 41540 TACACCTCCGAGTGGATGTTCTCAATCGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCA 41481 Query 75099 GCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAG 75158 | || ||| || || | ||| ||||| ||| ||||| |||||||||| || | Sbjct 41480 GGAACCTGCACCTCGCTGCTAAAGTTCATCGCGAGGTTCTCGTTGACGATGCCATCACTG 41421 Query 75159 GCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCC 75218 || ||||| || || || || |||||||||| |||||| | ||| ||||| |||| | Sbjct 41420 GCCGCGAAGAACGCGAGCACGTGCTTGATAAAGTAGCGCTCGTTGTCCGTGAGGTTGTTC 41361 Query 75219 CAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCC 75278 || ||||| ||||| | | | |||||||| || |||||||||| ||| | ||| Sbjct 41360 CAGTCCTTGAGGTCGTGCACGAGGTCAATCTCTTCAGCCGTCCAGAAGCTCGCCTCAGCC 41301 Query 75279 TTTTTGTACA 75288 || ||||||| Sbjct 41300 TTCTTGTACA 41291 >seq44 Length=43120 Score = 143 bits (158), Expect = 3e-29 Identities = 308/454 (68%), Gaps = 10/454 (2%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || ||||| ||||| ||||||| ||| | |||||||| || || ||||| | Sbjct 26318 CCTGTGCCAATGCCTTCTGCGCCGTTGATCAGCAGCATCGGCAGGATCGGCACGTAATAG 26377 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAA---CGGAATTGTCAGCC 151992 | |||||||| | | || || || |||||| ||| | || || ||| | Sbjct 26378 TGGGGCTCCACTGGGTACCCATCGTCGTCCACGTAGCTCAGCAGCGCGTCATCGTCCTCT 26437 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACG-CGTGAAGATGTATCGGGAGCTGGC 152051 ||| || | | | || || || || | | ||||||||| || || | || || Sbjct 26438 GGA---AACAGCAGACGCGTG-TACTTCTGCAGCAACGTGAAGATATAGCGCGGACTTGC 26493 Query 152052 CGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111 || |||||||| || ||| ||||| ||||||||||| || || | || | || Sbjct 26494 GGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGTCCCGACGGATACAGCAATGGCAG 26553 Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTC 152171 |||||| || || || | | ||| |||| || |||||||| ||||| ||| || Sbjct 26554 GTTGTTAGCACCGACATAGTCCTGCGCCATGTTGACAATCGTCGAGTGCAGCGACGCCTC 26613 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGA-TGTATCCCGCCAACTGCGCCACCTTCATGT 152230 |||||||| ||||| || |||| ||| | ||| || || | |||||| ||||| | | Sbjct 26614 GCCGTGGTGGTACGCAGTGTGCT-CGCTACAGTAACCAGCGAGCTGCGCGACCTTGACCT 26672 Query 152231 CCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAAC 152290 || ||||||| || ||| ||||| ||| | | |||||||||||| || || | | Sbjct 26673 CCTTCGTCAGCTTGCGCTTCAGACACGCGAACAGCACCTTGCGCTGCGAGACCTTGAGCC 26732 Query 152291 CGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 |||| |||||| || | ||| ||| | |||| Sbjct 26733 CGTCGACCACGGACGGTAGCGACCGCGCGTTGTC 26766 Score = 109 bits (120), Expect = 6e-19 Identities = 175/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || || || | ||||| || |||||||| || || ||||| || || ||| Sbjct 26471 GTGAAGATATAGCGCGGACTTGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGT 26530 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||| | || | ||||||||| || || ||| ||| || |||| ||||||| Sbjct 26531 CCCGACGGATACAGCAATGGCAGGTTGTTAGCACCGACATAGTCCTGCGCCATGTTGACA 26590 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC-GTAGCC 117483 ||||| || || |||||| || ||||| ||||| || |||| ||| || ||| || Sbjct 26591 ATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCT-CGCTACAGTAACC 26649 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCAC 117543 || ||||| || ||||| | || |||||| || ||| || || || | | ||| Sbjct 26650 AGCGAGCTGCGCGACCTTGACCTCCTTCGTCAGCTTGCGCTTCAGACACGCGAACAGCAC 26709 Query 117544 CTTGCGCTG 117552 ||||||||| Sbjct 26710 CTTGCGCTG 26718 >seq179 Length=23435 Score = 125 bits (138), Expect = 8e-24 Identities = 358/549 (65%), Gaps = 15/549 (3%) Strand=Plus/Minus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCT- 159001 |||||| || | ||||| ||| || ||||| | ||||||||||| || || || Sbjct 14934 AAACTCACGCACACTGTGGCACTCGCCCGTCGCGACGACAAAGTCCTCGGG---GGTCTC 14878 Query 159002 --GTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTT 159059 | || | ||| ||||||| ||||||||| || |||| ||||||||||||||||| Sbjct 14877 GTGCTGCAACATCTTCCACATGCACTCGACGTAGTCGCGCGCATGACCCCAGTCGCGCTT 14818 Query 159060 GGCATCCATGTTCCCGAGCTCGATGACTT------TTCCAGACTTTTTCCACTCAGCCAG 159113 || |||| || |||| | | | | | |||| || | | | || | Sbjct 14817 CGCCTCCAGATTACCGATGTACAGGCAGTCCTCGATACCAGCGTTGATGCGCACAACGG- 14759 Query 159114 ACCGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAA 159173 || ||||||||||||| ||||||||| || |||||| || ||| ||||| || Sbjct 14758 --CGCGCGTGATCTTGCGGGTCACAAACGTTGGTCCGCGTCGCGGGCTCTCGTGGTTGAA 14701 Query 159174 CAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTA 159233 || |||||| | || |||| | || | ||||||||| ||| ||||||| Sbjct 14700 GAGGATGCCGTTTACGGCAAACATGCCGTACGCCTCGCGGTAGTTTACGACGCTCCAGTA 14641 Query 159234 TCCAAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTG 159293 |||| |||||| || ||||| || || || |||||||||||| ||| || || Sbjct 14640 AGCAAACTGCTTGGCAACACCGTACGGCGAGCGCGGGTAAAATGGTGTCAGCTCGTTCTG 14581 Query 159294 AATTGGTTCCTGAACCTTTCCAAACATTTCACTCGTCCCAGCCTGATAAAATTTGAATTT 159353 | |||| || || || | | || |||||| ||||| ||||| ||| | Sbjct 14580 CGGGGTGGCCTGCACTTTGCCGTAGAGCTCGCTCGTCGATGCCTGGTAAAACTTGGTCGT 14521 Query 159354 AGAAACAAAATTGAATTGACGAATTGCTTCAAGAATTCGAAGGGTACCCATGGCGTCGAC 159413 | | | | || || | || | ||| || || || | |||||||| Sbjct 14520 CTTCTCCATGCCGCACGTGCGGATGCAGTTGAGTAGTCGGAGCGTGCCGAGCGCGTCGAC 14461 Query 159414 GTTCGCCGTGTACTCGGGCTGCTCAAAAGAGAGCTTCACGTGTGACTGGGCTCCGAGGTT 159473 || ||||||||||||| | ||| || || | ||| ||||| ||| ||| ||||||| Sbjct 14460 GTCGGCCGTGTACTCGGACATCTCGAACGACACCTTGACGTGCGACATCGCTGCGAGGTT 14401 Query 159474 ATAGACCTC 159482 |||| ||| Sbjct 14400 GTAGATCTC 14392 Score = 123 bits (136), Expect = 3e-23 Identities = 249/363 (69%), Gaps = 21/363 (6%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 ||| | ||||| ||||||||| | ||||| ||| ||||| | | || || || || Sbjct 14946 CGCGAGCTCGACAAACTCACGCACACTGTGGCACTCGCCCGTCGCGACGACAAAGTCCTC 14887 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 ||| || ||||||||||| ||||||| | ||||||||| || || ||||| Sbjct 14886 GGGGGTCTCGTGCTGCAACATCTTCCACATGCACTCGACGTAGTCGCGCGCATGACCCCA 14827 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTGGCCGTCTTG--TTCCAC--- 124655 ||||||||| || ||||| || |||| | | ||| ||| | | ||| Sbjct 14826 GTCGCGCTTCGCCTCCAGATTACCGATGTACA-------GGCAGTCCTCGATACCAGCGT 14774 Query 124656 ---TCCGCCAAAC--CCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAG 124710 | ||| ||| | | || |||||||| ||||||||| | ||||||||| Sbjct 14773 TGATGCGCACAACGGCGCGCGTGATCTTGCGGGTCACAAACGTTGGTCCGCGTCGCGGGC 14714 Query 124711 ACTCGTGGTTGAACAGAATGCCAGTACACG-CAAACATCCCGTACGACTCGCGGTAGTTT 124769 |||||||||||| || ||||| || ||| ||||||| ||||||| |||||||||| || Sbjct 14713 TCTCGTGGTTGAAGAGGATGCC-GTTTACGGCAAACATGCCGTACGCCTCGCGGTAG-TT 14656 Query 124770 TTCGTC-ATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGG 124828 | || | |||| || |||| |||||| || || || || || ||||| ||||| Sbjct 14655 TACGACGCTCCAGTAAGCAAACTGCTTGGCAACACCGTACGGCGAGCGCGGGTAAAATGG 14596 Query 124829 GGT 124831 || Sbjct 14595 TGT 14593 >seq440 Length=14964 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 152028 CGTGAAGATGTATCG-GGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 ||| |||||||| || || | || | ||||| || ||||| || || || || ||||||| Sbjct 2772 CGTAAAGATGTAACGAGGCGATG-CTGCATCTTTACCACCCGCTAGTCGAGTACCAAACT 2714 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || || | || | || ||||||| ||||| |||| || |||| || | Sbjct 2713 GACCGTTTGGAGACAACAGATGGATGTTGTTGCTTCCCACAAAATCTTGGGCCATGTTGA 2654 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 ||||||||| | |||||| |||||||||||| ||||| | ||||| | | ||||| Sbjct 2653 TAATCGTGCCGTTGAGACTCTGTTCACCGTGGTGGTACGCAGAATGCTCGGACACGTATC 2594 Query 152207 CCGCCAACTGCGCCACCTTCATGTC 152231 | | | ||| || ||||| || || Sbjct 2593 CACCAAGCTGAGCAACCTTAATTTC 2569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547140183223200