Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq217 342 6e-89 seq44 158 1e-33 seq45 104 3e-17 seq440 89.7 6e-13 >seq217 Length=20966 Score = 342 bits (378), Expect = 6e-89 Identities = 917/1382 (66%), Gaps = 40/1382 (3%) Strand=Plus/Plus Query 80301 CGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGGTGCTTGTTAATCATGACAAACTC 80360 |||||||| || |||| | || || |||| |||| |||||| | || ||||| Sbjct 16969 CGTCCAGATGCCGAGCTCGATGAGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTC 17028 Query 80361 TCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTT 80420 || || || ||| || |||| ||| || ||| | ||||| | | ||||||||| Sbjct 17029 GCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTT 17088 Query 80421 TCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAG 80480 ||||||||||| || || ||||||||||||||| ||| || ||| || || |||| Sbjct 17089 GCCGAGGATCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCAC 17148 Query 80481 GCCGTGCTTCTTGA---TATCCTCG--CGCAAATCTGACCAAAAATCAACCCCAACGCTG 80535 ||||| || | || | ||| | ||| | | || | | | | || | Sbjct 17149 GCCGTACTGCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCAGAGGCCGGACGTCGGC-G 17207 Query 80536 TGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCT 80593 |||| |||||||||||| ||| |||||||||| | | || || ||| || | | Sbjct 17208 TGACGCCCCACATGTCGTACTGGAAGATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGG 17267 Query 80594 CGTACGGGCCCTCCGTCTTGGCCAGCTCACACGA---CTCCATAAGGGCCGCGTGATAAA 80650 |||||||||| | | ||| || ||||| ||| |||||| | |||| || Sbjct 17268 CGTACGGGCCGTGCTCCTTCGCGAGCTCCATCGAGGCCTCCATC-GCGCCG------AAG 17320 Query 80651 TGCA----CTCAAAGACGCCCTTGTTCACACCGCGCGCCT-GTGGGTCGTCGAACGACAA 80705 | || ||| |||| | |||||| | |||| |||| || | || || |||| | Sbjct 17321 TACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGTGCCTCGTCGCTC-TCAAACGCGTA 17379 Query 80706 GCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCG 80765 |||||| | |||||| |||| || || ||||| ||||||||| |||||||||||||||| Sbjct 17380 GCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCG 17439 Query 80766 CTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAG 80825 | ||| |||||||||||| || || ||||| |||| | |||||||| ||| || Sbjct 17440 CAGGTTGCTTCGCTCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAG 17499 Query 80826 GTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA---TTGGTTCCC 80882 |||||| || || ||| || | || | || |||| |||||||| | || | Sbjct 17500 GTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTTCTTGAAGTCGAAGGTCTTGTCGTC 17559 Query 80883 CTTCACAAATGCCGGAAGGCTC-AGGGACGCCAGATTGCACACGGCCACCTCTTCAGCAT 80941 |||||||| ||| || | | |||||| || |||||||| || ||||| || | Sbjct 17560 GTTCACAAA-CTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCG 17618 Query 80942 CTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCT 81001 || |||||| | || ||| | || || || || || ||||| | || Sbjct 17619 ACGTGTACTCGAGCACCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCT 17678 Query 81002 GGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCT 81061 |||| |||||| ||| || | ||||||||| ||||||||| || || ||||||| || Sbjct 17679 GGTTCGACTTGCGGTTACACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCT 17738 Query 81062 GTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTT 81121 | |||| |||||| ||| ||| | || |||| || | |||||| ||| | Sbjct 17739 GCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCT 17798 Query 81122 CGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGT-GAGGTC 81179 || | | |||| | ||| ||| | ||||||| | |||| | || || ||| | Sbjct 17799 CGCGCTCGTACTGGTGGTACAGC-GCCTCGAACTCGTCACC-CCACGTCGTGTAGAGACC 17856 Query 81180 TGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAA 81239 || |||||| ||||| | |||| ||| ||| || | ||| || ||||||||| Sbjct 17857 CGGTGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAA 17916 Query 81240 AGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCC 81297 || || ||||| | ||| |||||| || || |||||| | ||| | || Sbjct 17917 GAGATCGGGAATCCACATCGCGTAGAACAGATCACG--AGCGCGGTGCAGCTCGTTGCCG 17974 Query 81298 TGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACG 81357 ||||| | ||||| || || | |||||| || ||||| ||||| ||||||| Sbjct 17975 TGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGATACATC 18034 Query 81358 GCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAAT 81414 |||| ||| |||||||| | ||||||||| | || ||||| || || |||| || Sbjct 18035 GCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAAC 18094 Query 81415 ACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCC 81474 || |||| ||| || | || || | ||| |||||||| || ||| ||| Sbjct 18095 ACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCACGGATGTACGAGTTG 18154 Query 81475 TTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCA 81534 | ||||| | ||| | | ||| ||||| || | |||||| || || || Sbjct 18155 GTCGCGCGGATGTTGTGCACGCTGACACCAATGCCGCCGGCCCACTTGGAGATGCAGGCG 18214 Query 81535 CACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAA 81594 ||| | || | || ||||| || |||||||| || | |||||| | |||| ||| Sbjct 18215 CACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAG 18274 Query 81595 CAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATG 81654 || |||| ||| |||| | |||||| |||||||| || || |||||||| || Sbjct 18275 CACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTG 18334 Query 81655 AA 81656 || Sbjct 18335 AA 18336 >seq44 Length=43120 Score = 158 bits (174), Expect = 1e-33 Identities = 201/274 (73%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 31977 CGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAA 32036 ||||| ||||| |||||| || |||||||||||| | | ||| || || ||| || Sbjct 26743 CGTGGTCGACGGGCTCAAGGTCTCGCAGCGCAAGGTGCTGTTCGCGTGTCTGAAGCGCAA 26684 Query 32037 CCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTAC-GTGGCAGAGCAAACGGCCT 32095 ||| ||| || | ||||| |||||||| | || ||| || || ||||| || || | Sbjct 26683 GCTGACGAAGGAGGTCAAGGTCGCGCAGCTCGCTGGTTACTGTAGC-GAGCACACTGCGT 26625 Query 32096 ATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCG 32155 | |||||||||||||||||||| || || ||||||||| | || ||| ||| ||||| Sbjct 26624 ACCACCACGGCGAGGCGTCGCTGCACTCGACGATTGTCAACATGGCGCAGGACTATGTCG 26565 Query 32156 GTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTG 32215 |||| || |||||| || || | || || ||||||||||| || || || || | Sbjct 26564 GTGCTAACAACCTGCCATTGCTGTATCCGTCGGGACAGTTTGGCACGCGCCTGCAGGGCG 26505 Query 32216 GCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 ||||||| || || || | || || |||||||| Sbjct 26504 GCAAGGACGCCGCAAGTCCGCGCTATATCTTCAC 26471 >seq45 Length=43062 Score = 104 bits (114), Expect = 3e-17 Identities = 352/540 (65%), Gaps = 9/540 (2%) Strand=Plus/Plus Query 64321 TGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCGCC 64380 ||| || | |||||||| || || || |||||||||| || ||| |||| |||| Sbjct 41284 TGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGGACGGCTGAAGAGATTGACCTCGTG 41343 Query 64381 AAGGATCTCAGCGACTGGGAAAACCTAAACTCACAGGAACAGC-ACTTCATCAAGTTGGT 64439 | || |||| |||||| | ||||| | | ||| | || |||| |||||| || Sbjct 41344 CACGACCTCAAGGACTGGAACAACCTCA-CGGACAACGAGCGCTACTTTATCAAGCACGT 41402 Query 64440 CCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGGACCTAAATTTTAC 64499 || || |||||||| | ||||| || || || ||||| | | | || |||| Sbjct 41403 GCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCGCGATGAACTTTAG 41462 Query 64500 AAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATTT--AACGAA 64557 | || || ||| | || |||||||| | ||||| | | ||| ||| | || Sbjct 41463 CAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTACGGCTTCCAG--ATTGCGATTGAG 41520 Query 64558 AGTATTCATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAG 64617 | || || ||| ||| ||||| | || |||| || | ||| | |||| Sbjct 41521 AACATCCACTCGGAGGTGTACTCGCTGCTCATCGACACGTACATCAAGGACCAGACCGAG 41580 Query 64618 AAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGG 64677 ||| | || | | || || ||||| | || ||| || ||||| | ||| Sbjct 41581 AAGAACCACCTTCTTCGCGCCATCGAGACGATCCCTTGTGTGCAGAAGAAGGCCCACTGG 41640 Query 64678 GCCATCCGGTGGAT-GAATCGTGGGTCGTCGT-TTGGTC-AGCGTCTCGCAGCTTTTGCC 64734 || || |||| || ||| | || || || | | ||||| ||| || || || Sbjct 41641 GCGCTCAAGTGGTGCGACTCGCGCCGCGCCGCGTTCGCCGAGCGTATCGTCGCGTTCGCT 41700 Query 64735 TGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGG 64794 || || || || ||||| || || || ||||| ||||| |||||||| || ||||| Sbjct 41701 GCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCTATCTTCTGGCTCAAGAAGCGC 41760 Query 64795 GGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCAC 64854 ||||| ||||| || || || ||||||||||| ||||| || |||||||| |||||| Sbjct 41761 GGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACGAGGGTCTCCAC 41820 >seq440 Length=14964 Score = 89.7 bits (98), Expect = 6e-13 Identities = 233/348 (67%), Gaps = 8/348 (2%) Strand=Plus/Plus Query 31198 ACGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGC 31257 || ||||| || ||||||||||| || |||| ||||| || ||| | || | ||| Sbjct 1576 ACAGGAATCCCAAAGCTCGACGATGCGAACTACGCCGGCACAGCGAAGGCTCAAAACTGC 1635 Query 31258 ACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTT 31317 ||||| ||| | || ||||| || || || || | | || || |||| | |||| Sbjct 1636 ACGCTGATTCTGACTGAGGGCGAGTCAGCCAAAACCTTCGCAATCAGTGGCCTCTCTGTT 1695 Query 31318 GTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGAC 31377 || || ||| || | ||| || || ||| | ||||||| || |||||||| || Sbjct 1696 GTTGGACGCGATTACTACGGCGTCTTCCCGTTGAAGGGCAAGCTGCTCAACGTTCGAGAA 1755 Query 31378 GCCTCCGTTAAA--CAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCG 31435 || || | | || | | | | ||||||||| || | | || || ||| | | Sbjct 1756 GC--GAGTCACACTCAAATCATGAAGAATGAAGAGATTCAGAGCTTGGTCAAAATCTTGG 1813 Query 31436 GGCTTCAGCATGG-CA-AGGTATATAATTCACTGAGAGAATTGCGGTACGGTCGCCTCAT 31493 |||| |||| || || | |||| ||| || |||| || || ||||| | | || Sbjct 1814 GGCTCAAGCACGGTCACAAGTAT-GAATCAACGAAGAGTCTT-CGTTACGGGCATTTGAT 1871 Query 31494 GATTATGACCGACGCAGATCTCGACGGCAGTCACATCAAGGGTCTTGT 31541 ||| ||| | || |||| ||||||||||||||||||||||| || Sbjct 1872 GATCATGGCAGATCAGGATCATGACGGCAGTCACATCAAGGGTCTGGT 1919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570231383494080