Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950935.1_202016-12-27] 11,084 sequences; 34,541,218 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq191 208 6e-49 seq1775 84.2 2e-11 >seq191 Length=22522 Score = 208 bits (230), Expect = 6e-49 Identities = 489/732 (67%), Gaps = 6/732 (1%) Strand=Plus/Minus Query 29737 CATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTT 29796 |||| |||| | || | | |||||| | |||||| ||||| ||| ||||| Sbjct 15755 CATCGCCATCTTGATCGTGCCATGAGGCTTGTAACCTTCCAGCTCGAAGTCCTCGAAGAC 15696 Query 29797 AAAGTCGTCCAGGCTCTCCACCCTC-CTG--TTTATCCTCAGTGT-GGGAAAGGGTCTGG 29852 ||| || || | ||| | | || ||| || ||| |||| || ||||||| || Sbjct 15695 AAACTCATCGATGCTGTTGGTCTTCTCTGGGTTGATCTTCAGCGTCGGGAAAGCCCGCGG 15636 Query 29853 GCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTC 29912 | | | | |||||||| ||| ||||||||||| | | || ||||| ||| || || | Sbjct 15635 GGTGCGGC-CGAGCTGAACCTTAAGCGGTTCCACATGGTTCAAGTAGATGTGCGCATCGC 15577 Query 29913 CCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGA 29972 | | |||||| || ||||| | ||||| ||||| || || || | || | Sbjct 15576 CGATCGTGTGGATGAAGTCTCCAGCACGCAGCCCTGTGACCTGCGCGATGAGTCGAGTCA 15517 Query 29973 GGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGT 30032 || | |||||| ||||||||||| || || ||||| |||||||| | || | ||||| Sbjct 15516 ACAGCGCGTAGCTCGCGATGTTAAAAGGCACGCCGAGTCCCATGTCAGCTGAGCGCTGGT 15457 Query 30033 AGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAG 30092 | | ||||||||| ||||| |||| | ||||| ||||| || | ||| ||||| | Sbjct 15456 ACATCTGACACGACAGCTCGCCGTTGGCGACGTAGAACTGGCAGAACATGTGACACGGCG 15397 Query 30093 GAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTT 30152 | || ||||| | ||| |||||||| || ||| ||||||||| | || | Sbjct 15396 GCAGCGCCATCTCCTTGAGGTCCGCAGGGTTCCATGCCGACATGATGATGCGACGATCGT 15337 Query 30153 CTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 30212 |||||| || ||| || | | | | |||||| || || ||| || | || Sbjct 15336 TTGGGTTCGTCTTGAGCTTGTGAATGACCTCCGCCAGCTGGTCGACTCCCTGGCCAGTGT 15277 Query 30213 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCG 30272 | || || |||| |||||||| || || || || | ||||||||| || ||||| | Sbjct 15276 AATCGGCGTGCATGGTCGTGTACTTGGCACCAAAGTGGCGCCACTGGAAGCCATACACTG 15217 Query 30273 GTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAAC 30332 |||| || || || |||| | || ||| || | | |||| | || |||| | Sbjct 15216 GTCCGAGATCGCCAGCTTCACGATGACCGAGACCGATGCTCTCCAGGTATTCCTTGGATC 15157 Query 30333 CGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTC 30392 | || | ||||| || | | ||||| || | | |||| ||||||| || | Sbjct 15156 CATTACCATCCCAAATGTGGATGCCCTTGTCCTGCAACGTCTTGGCGTTTGTGTCGCCAC 15097 Query 30393 TGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGA 30452 ||| ||||||||||||||| ||| ||||| | ||| || || | |||||||| || | Sbjct 15096 TGATGAACCACAGCAGCTCTTCCGCGACGCCGCGCCAGAATACGCGTTTGGTCGTCAGCA 15037 Query 30453 G-GGGAAACTGT 30463 | |||||| ||| Sbjct 15036 GCGGGAAAATGT 15025 >seq1775 Length=5132 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/138 (78%), Gaps = 7/138 (5%) Strand=Plus/Minus Query 52761 CCAGAGATGGGCGACAAGTTT-GC-GTCGTTCACGGCGCAAAAGGGGACGTGCGGAGCCG 52818 || ||||| ||||||||||| || |||| |||||| || ||||| |||||| | Sbjct 1052 CCCGAGATCGGCGACAAGTTCAGCAGTCGC-CACGGC-CAGAAGGGCGTGTGCGGCACGA 995 Query 52819 TCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCC-GACCTCATCATC 52877 ||| | ||||||||||||||| ||| || | ||||| || |||||| ||||| ||||| Sbjct 994 TCCGCAACCAGGAGGACATGCCGTTCAACGACGACGGCGT-GTGCCCGGACCTGATCATG 936 Query 52878 AACCCCCACGCCTTTCCC 52895 ||||| |||| |||||| Sbjct 935 AACCCGCACG-GTTTCCC 919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406255513051728